Gene: AT5G05660 (Arabidopsis thaliana)

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Gene Identifier
AT5G05660
Transcript Identifier
AT5G05660.1
Gene Type
Coding gene
Location
5 : 1691113-1695464 : negative

Family

Gene family
HOM03M002425
(35 genes in 15 species)
specific family

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Descriptions

Description
sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Curated Summary
Encodes a homolog of the mammalian zinc finger transcription factor NF-X1.
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Identifiers

Identifier Name
aliasEARLY BIRD
aliasNFXL2
aliasArabidopsis NF-X like 2
aliasEBI
aliasATNFXL2
aliasNFX1-like 2
uniprotQ9FFK8

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355ISS, IEAGene Ontologyregulation of transcription, DNA-dependent1
GO:0009651IMPUniProtresponse to salt stress1 2 3 4 5 6 7 8
GO:0010310IMPUniProtregulation of hydrogen peroxide metabolic process1 2 3 4 5 6 7 8
GO:0007623IMPGene Ontologycircadian rhythm1
GO:0009908IMPGene Ontologyflower development1
GO:0045893IMPGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0042335IMPGene Ontologycuticle development1
GO:0045892IEPGene Ontologynegative regulation of transcription, DNA-dependent1
GO:2000037IMPGene Ontologyregulation of stomatal complex patterning1
GO:0016567IEAUniProtprotein ubiquitination1 2 3 4 5 6 7
GO:0048511IEAUniProtrhythmic process1 2 3 4 5 6 7
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M002425

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700IEA, ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8
GO:0000987IDAGene Ontologycore promoter proximal region sequence-specific DNA binding1
GO:0016874IEAUniProtligase activity1 2 3 4 5 6 7
GO:0008270IEAUniProtzinc ion binding1 2 3 4 5 6 7
GO:0005515IEAPLAZA Homologyprotein bindingHOM03M002425

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, IDA, ISM, ISSUniProtnucleus1 2 3 4 5 6 7 8 9 10
GO:0016021IEAUniProtintegral to membrane1 2 3 4 5 6 7

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000967Zinc finger, NF-X1-type
IPR019786Zinc finger, PHD-type, conserved site

Mapman id Description
27.3.67RNA.regulation of transcription.putative transcription regulator
No SignalP domains detected for this gene.
DatabaseType
PlantTFDBNF-X1