Gene: AT5G04290 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G04290
Transcript Identifier
AT5G04290.1
Gene Type
Coding gene
Location
5 : 1196069-1202653 : positive

Family

Gene family
HOM03M001537
(50 genes in 16 species)
specific family
Subfamily
ORTHO03M024497
(2 genes in 2 species)
specific family

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Descriptions

Description
kow domain-containing transcription factor 1
Curated Summary
Encodes SPT5-Like, a member of the nuclear SPT5 (Suppressor of Ty insertion 5) RNA polymerase (RNAP) elongation factor family that is characterized by the presence of a carboxy-terminal extension with more than 40 WG/GW motifs. Interacts with AGO4. Required for RNA-directed DNA methylation.
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Identifiers

Identifier Name
aliasSPT5L
aliaskow domain-containing transcription factor 1
aliasSPT5-LIKE
aliasKTF1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006306IMPGene OntologyDNA methylation1
GO:0030422IMPGene Ontologyproduction of siRNA involved in RNA interference1
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03M001537
GO:0006412IEAPLAZA HomologytranslationHOM03M001537
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M001537
GO:0006355IEAPLAZA Homologyregulation of transcription, DNA-dependentHOM03M001537

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166ISSGene Ontologynucleotide binding1
GO:0003735IEAPLAZA Homologystructural constituent of ribosomeHOM03M001537

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0005840IEAPLAZA HomologyribosomeHOM03M001537

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005824KOW
IPR005100Transcription elongation factor Spt5, NGN domain

Mapman id Description
27.3.67RNA.regulation of transcription.putative transcription regulator
No SignalP domains detected for this gene.