Gene: AT5G04280 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G04280
Transcript Identifier
AT5G04280.1
Gene Type
Coding gene
Location
5 : 1192461-1195413 : positive

Family

Gene family
HOM03M000068
(644 genes in 16 species)
specific family
Subfamily
ORTHO03M004804
(7 genes in 6 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
Curated Summary
Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b), AT5G04280 (AtRZ-1c).
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Identifiers

Identifier Name
aliasRZ-1c
aliasAtRZ-1c

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009409IEP, IGIGene Ontologyresponse to cold1 2
GO:0009414IEPGene Ontologyresponse to water deprivation1
GO:0009651IEPGene Ontologyresponse to salt stress1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723ISSGene OntologyRNA binding1
GO:0003676IDA, IEAGene Ontologynucleic acid binding1
GO:0000166IEAInterPronucleotide binding
GO:0008270IEAInterProzinc ion binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M000068
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03M000068
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03M000068
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03M000068

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005730IDAGene Ontologynucleolus1
GO:0005634IDAGene Ontologynucleus1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001878Zinc finger, CCHC-type
IPR000504RNA recognition motif domain
IPR012677Nucleotide-binding, alpha-beta plait

Mapman id Description
27.4RNA.RNA binding
No SignalP domains detected for this gene.