Gene: AT5G04275 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G04275
Transcript Identifier
AT5G04275.1
Gene Type
RNA gene
Location
5 : 1188211-1188299 : negative

Family

No gene family defined for this gene.

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Descriptions

Description
MIR172/MIR172B; miRNA
Curated Summary
Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AGAAUCUUGAUGAUGCUGCAU. Pri-mRNA coordinates for MIR172b (converted to TAIR10 based on PMID19304749): Chr5: 1188916-1187500 (reverse), length: 1417 bp; exon coordinates: exon 1: 1188916 to 1188742, exon 2: 1188623 to 1188583, exon 3: 1188383 to 1188133, exon 4: 1187852 to 1187500; mature miRNA and miRNA* are located on exon 3.

Identifiers

Identifier Name
aliasEARLY ACTIVATION TAGGED
aliasMIR172
aliasmicroRNA172B
aliasMIR172B
aliasEAT
aliasMICRORNA 172

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Explore

  • ...the colinearity of this gene with other genomes.
  • ...the local gene organization for homologous genes.
  • ...the phylogenetic tree of the homologous gene family.
  • ...the orthologs using the Integrative Orthology Viewer.
  • ...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0035195TASGene Ontologygene silencing by miRNA1
GO:0009908IMPGene Ontologyflower development1
GO:0010022IMPGene Ontologymeristem determinacy1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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No InterPro domains detected for this gene.
Mapman id Description
32micro RNA, natural antisense etc
No SignalP domains detected for this gene.