Gene: AT5G02840 (Arabidopsis thaliana)

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Gene Identifier
AT5G02840
Transcript Identifier
AT5G02840.1
Gene Type
Coding gene
Location
5 : 648794-651212 : positive

Family

Gene family
HOM03M000510
(126 genes in 16 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
LHY/CCA1-like 1
Curated Summary
CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
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Identifiers

Identifier Name
aliasLCL1
aliasLHY/CCA1-like 1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355ISSGene Ontologyregulation of transcription, DNA-dependent1
GO:0009651IEP, RCAGene Ontologyresponse to salt stress1 2
GO:0009723IEP, RCAGene Ontologyresponse to ethylene1 2
GO:0009733IEP, RCAGene Ontologyresponse to auxin1 2
GO:0009737IEP, RCAGene Ontologyresponse to abscisic acid1 2
GO:0009739IEP, RCAGene Ontologyresponse to gibberellin stimulus1 2
GO:0009751IEP, RCAGene Ontologyresponse to salicylic acid1 2
GO:0009753IEP, RCAGene Ontologyresponse to jasmonic acid1 2
GO:0046686IEP, RCAGene Ontologyresponse to cadmium ion1 2
GO:0007623IMPGene Ontologycircadian rhythm1
GO:0048573RCAGene Ontologyphotoperiodism, flowering1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding1
GO:0003700ISSGene Ontologysequence-specific DNA binding transcription factor activity1
GO:0003682IEAInterProchromatin binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009057Homeodomain-like
IPR001005SANT/Myb domain
IPR006447Myb domain, plants
IPR017930Myb domain

Mapman id Description
27.3.26RNA.regulation of transcription.MYB-related transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBMYB-related
PlantTFDBMYB_related