PLAZA 3.0 Monocots gene overview : AT5G02190

Gene: AT5G02190 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G02190
Transcript Identifier: AT5G02190.1
Gene Type: Coding gene
Location: 5 : 435322-436683 : positive

Family

Gene family: HOM03M000031
(1041 genes in 16 species)
specific family
Subfamily: ORTHO03M009748
(4 genes in 4 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: Eukaryotic aspartyl protease family protein

Curated Summary: encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.

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Identifiers

Identifier	Name
alias	EMBRYO DEFECTIVE 24
alias	ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38
alias	EMB24
alias	PROMOTION OF CELL SURVIVAL 1
alias	PCS1
alias	ATASP38
uniprot	Q9LZL3

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009793	IMP	Gene Ontology	embryo development ending in seed dormancy	1
GO:0012501	IMP	UniProt	programmed cell death	1 2 3
GO:0006508	IEA	UniProt	proteolysis	1 2
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000031
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03M000031
GO:0043170	IEA	PLAZA Homology	macromolecule metabolic process	HOM03M000031
GO:0019538	IEA	PLAZA Homology	protein metabolic process	HOM03M000031
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03M000031

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004190	ISS, IEA,	UniProt	aspartic-type endopeptidase activity	1 2 3
GO:0008233	IDA	Gene Ontology	peptidase activity	1
GO:0070011	IEA	PLAZA Homology	peptidase activity, acting on L-amino acid peptides	HOM03M000031
GO:0004175	IEA	PLAZA Homology	endopeptidase activity	HOM03M000031
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03M000031
GO:0070001	IEA	PLAZA Homology	aspartic-type peptidase activity	HOM03M000031
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000031

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005576	ISM	Gene Ontology	extracellular region	1
GO:0005783	IDA	UniProt	endoplasmic reticulum	1 2 3

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR021109	Aspartic peptidase domain
IPR001461	Aspartic peptidase
IPR001969	Aspartic peptidase, active site

Mapman id	Description
27.3.99	RNA.regulation of transcription.unclassified

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network