Gene: AT4G40060 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G40060
Transcript Identifier
AT4G40060.1
Gene Type
Coding gene
Location
4 : 18571682-18572774 : negative

Family

Gene family
HOM03M000110
(422 genes in 14 species)
specific family
Subfamily
ORTHO03M005361
(6 genes in 4 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
homeobox protein 16
Curated Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
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Identifiers

Identifier Name
aliasATHB16
aliashomeobox protein 16
aliasHB16
aliasATHB-16
uniprotQ940J1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355ISS, IEAGene Ontologyregulation of transcription, DNA-dependent1
GO:0009637IMPUniProtresponse to blue light1 2 3 4 5
GO:0030308IMPUniProtnegative regulation of cell growth1 2 3 4 5
GO:0048510IMPUniProtregulation of timing of transition from vegetative to reproductive phase1 2 3 4 5
GO:0048573IMP, RCA, UniProtphotoperiodism, flowering1 2 3 4 5 6
GO:0045893IDAUniProtpositive regulation of transcription, DNA-dependent1 2 3 4 5
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4
GO:0009414ISOPLAZA Integrative Orthologyresponse to water deprivationAT2G22430
GO:0009738ISOPLAZA Integrative Orthologyabscisic acid-activated signaling pathwayAT2G22430
GO:0009788ISOPLAZA Integrative Orthologynegative regulation of abscisic acid-activated signaling pathwayAT2G22430
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03M000110
GO:0010467IEAPLAZA Homologygene expressionHOM03M000110
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03M000110
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03M000110
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03M000110
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03M000110
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03M000110
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03M000110
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03M000110
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03M000110
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03M000110
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03M000110
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03M000110
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03M000110
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03M000110
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03M000110
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03M000110
GO:0065007IEAPLAZA Homologybiological regulationHOM03M000110
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03M000110
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03M000110
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03M000110
GO:1901576IEAPLAZA Homologyorganic substance biosynthetic processHOM03M000110
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03M000110
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03M000110
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03M000110
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M000110
GO:0009058IEAPLAZA Homologybiosynthetic processHOM03M000110
GO:0009059IEAPLAZA Homologymacromolecule biosynthetic processHOM03M000110
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03M000110
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03M000110
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03M000110
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03M000110
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03M000110
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03M000110
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03M000110
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03M000110
GO:0044249IEAPLAZA Homologycellular biosynthetic processHOM03M000110

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISS, NASIEA, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6
GO:0043565IDA, IEA, UniProtsequence-specific DNA binding1 2 3 4 5
GO:0000976IEAUniProttranscription regulatory region sequence-specific DNA binding1 2 3 4
GO:0003677IEAInterProDNA binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT2G22430
GO:0044212IEAPLAZA Homologytranscription regulatory region DNA bindingHOM03M000110
GO:0001067IEAPLAZA Homologyregulatory region nucleic acid bindingHOM03M000110
GO:0000975IEAPLAZA Homologyregulatory region DNA bindingHOM03M000110
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03M000110
GO:0001071IEAPLAZA Homologynucleic acid binding transcription factor activityHOM03M000110

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISM, ISSUniProtnucleus1 2 3 4 5 6
GO:0043231IEAPLAZA Homologyintracellular membrane-bounded organelleHOM03M000110
GO:0005622IEAPLAZA HomologyintracellularHOM03M000110
GO:0043226IEAPLAZA HomologyorganelleHOM03M000110
GO:0043227IEAPLAZA Homologymembrane-bounded organelleHOM03M000110
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03M000110
GO:0044424IEAPLAZA Homologyintracellular partHOM03M000110

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009057Homeodomain-like
IPR001356Homeobox domain
IPR017970Homeobox, conserved site
IPR000047Helix-turn-helix motif
IPR003106Leucine zipper, homeobox-associated

Mapman id Description
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBHB
PlantTFDBHD-ZIP