PLAZA 3.0 Monocots gene overview : AT4G39920

Gene: AT4G39920 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G39920
Transcript Identifier: AT4G39920.1
Gene Type: Coding gene
Location: 4 : 18515882-18516919 : positive

Family

Gene family: HOM03M004578
(21 genes in 16 species)
specific family

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Descriptions

Description: C-CAP/cofactor C-like domain-containing protein

Curated Summary: Microtubule-folding cofactor, produces assembly-competent alpha-/beta-tubulin heterodimers.

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Identifiers

Identifier	Name
alias	PORCINO
alias	TUBULIN-FOLDING COFACTOR C
alias	TFC C
alias	POR
uniprot	Q9SMR2

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0000226	IMP	UniProt	microtubule cytoskeleton organization	1 2 3 4 5
GO:0000910	IGI	Gene Ontology	cytokinesis	1
GO:0007021	ISS, IGI	UniProt	tubulin complex assembly	1 2 3 4 5 6
GO:0000902	IEA	UniProt	cell morphogenesis	1 2 3 4
GO:0007023	IEA	UniProt	post-chaperonin tubulin folding pathway	1 2 3 4

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IDA, ISM,	UniProt	cytoplasm	1 2 3 4 5 6

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR027684	Tubulin-specific chaperone C
IPR006599	CARP motif
IPR012945	Tubulin binding cofactor C-like domain
IPR017901	C-CAP/cofactor C-like domain
IPR016098	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal

Mapman id	Description
31.1	cell.organisation

No SignalP domains detected for this gene.