PLAZA 3.0 Monocots gene overview : AT4G39080

Gene: AT4G39080 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G39080
Transcript Identifier: AT4G39080.1
Gene Type: Coding gene
Location: 4 : 18209513-18214752 : positive

Family

Gene family: HOM03M001415
(54 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: vacuolar proton ATPase A3

Curated Summary: Vacuolar proton ATPase subunit VHA-a isoform 3. Localized in the tonoplast.

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Identifiers

Identifier	Name
alias	VHA-A3
alias	vacuolar proton ATPase A3
uniprot	Q8W4S4

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0015986	IDA	UniProt	ATP synthesis coupled proton transport	1 2 3 4 5 6 7 8 9
GO:0031669	IGI	UniProt	cellular response to nutrient levels	1 2 3 4 5 6 7 8 9
GO:0032119	IMP	UniProt	sequestering of zinc ion	1 2 3 4 5 6 7 8 9
GO:0043181	IMP	UniProt	vacuolar sequestering	1 2 3 4 5 6 7 8 9
GO:0070072	IMP	UniProt	vacuolar proton-transporting V-type ATPase complex assembly	1 2 3 4 5 6 7 8 9
GO:0071472	IGI	Gene Ontology	cellular response to salt stress	1
GO:0000902	RCA	Gene Ontology	cell morphogenesis	1
GO:0006816	RCA	Gene Ontology	calcium ion transport	1
GO:0007030	RCA	Gene Ontology	Golgi organization	1
GO:0007033	RCA	Gene Ontology	vacuole organization	1
GO:0009651	RCA	Gene Ontology	response to salt stress	1
GO:0016049	RCA	Gene Ontology	cell growth	1
GO:0048193	RCA	Gene Ontology	Golgi vesicle transport	1
GO:0015991	IEA	UniProt	ATP hydrolysis coupled proton transport	1 2 3 4 5 6 7 8
GO:0015988	IEA	PLAZA Homology	energy coupled proton transmembrane transport, against electrochemical gradient	HOM03M001415

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016887	ISS	Gene Ontology	ATPase activity	1
GO:0009678	IDA	UniProt	hydrogen-translocating pyrophosphatase activity	1 2 3 4 5 6 7 8 9
GO:0045735	IMP	UniProt	nutrient reservoir activity	1 2 3 4 5 6 7 8 9
GO:0015078	IEA	UniProt	hydrogen ion transmembrane transporter activity	1 2 3 4 5 6 7 8

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1
GO:0005773	IDA	Gene Ontology	vacuole	1
GO:0009705	IDA	UniProt	plant-type vacuole membrane	1 2 3 4 5 6 7 8 9
GO:0000325	IDA	Gene Ontology	plant-type vacuole	1
GO:0005774	IDA	Gene Ontology	vacuolar membrane	1
GO:0016020	IDA	Gene Ontology	membrane	1
GO:0005886	IDA	UniProt	plasma membrane	1 2 3 4 5 6 7 8 9
GO:0009507	IDA	Gene Ontology	chloroplast	1
GO:0009941	IDA	UniProt	chloroplast envelope	1 2 3 4 5 6 7 8 9
GO:0005794	IDA	UniProt	Golgi apparatus	1 2 3 4 5 6 7 8 9
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4 5 6 7 8
GO:0000220	IEA	UniProt	vacuolar proton-transporting V-type ATPase, V0 domain	1 2 3 4 5 6 7 8
GO:0033179	IEA	InterPro	proton-transporting V-type ATPase, V0 domain

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Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002490	V-type ATPase, V0 complex, subunit 116kDa

Mapman id	Description
34.1	transport.p- and v-ATPases

No SignalP domains detected for this gene.