Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene: AT4G33495 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT4G33495
- Transcript Identifier
- AT4G33495.1
- Gene Type
- Coding gene
- Location
- 4 : 16111349-16112578 : negative
Family
- Gene family
Descriptions
- Description
-
Ubiquitin carboxyl-terminal hydrolase family protein
- Curated Summary
-
A member of the RPD gene family - there are13 annotated genes and one EST encoding RPD1-like proteins in Arabidopsis. Shows no homology to any protein of known function. Abundant expression found in the shoot apex and the root. rpd1 mutant is a temperature-sensitive mutant isolated on the basis of the impairment in adventitious roots formation in hypocotyl region. Also, disruption of the RPD1 gene by a T-DNA insertion caused embryogenesis arrest at the globular to transition stages. This phenotype is consistent with the hypothesized function of RPD1 in the maintenance of active cell proliferation.
Identifiers
| Identifier | Name |
|---|---|
| alias | ROOT PRIMORDIUM DEFECTIVE 1 |
| alias | RPD1 |
| uniprot | Q689D6 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0008285 | IMP | UniProt | negative regulation of cell proliferation | 1 2 3 4 5 |
| GO:0010102 | IMP | UniProt | lateral root morphogenesis | 1 2 3 4 5 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0009507 | ISM | Gene Ontology | chloroplast | 1 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| Mapman id | Description |
|---|---|
| 35.2 | not assigned.unknown |
No SignalP domains detected for this gene.