PLAZA 3.0 Monocots gene overview : AT4G30140

Gene: AT4G30140 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G30140
Transcript Identifier: AT4G30140.1
Gene Type: Coding gene
Location: 4 : 14738603-14740548 : negative

Family

Gene family: HOM03M000019
(1569 genes in 14 species)
specific family
Subfamily: ORTHO03M018704
(2 genes in 1 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: GDSL-like Lipase/Acylhydrolase superfamily protein

Curated Summary: Member of the GDSL lipase/esterase family of proteins that functions as cutinase. Expressed in pollen and at the zone of lateral root emergence.

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Identifiers

Identifier	Name
alias	CUTICLE DESTRUCTING FACTOR 1
alias	CDEF1
uniprot	Q9SZW7

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016042	IEA	UniProt	lipid catabolic process	1 2 3 4
GO:0006629	IEA	InterPro	lipid metabolic process
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03M000019
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03M000019
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000019
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03M000019
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03M000019

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0050525	IDA	UniProt	cutinase activity	1 2 3 4 5
GO:0016787	IEA	InterPro	hydrolase activity
GO:0016788	IEA	InterPro	hydrolase activity, acting on ester bonds
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000019

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005576	ISM	Gene Ontology	extracellular region	1
GO:0005615	IDA	UniProt	extracellular space	1 2 3 4 5
GO:0090406	IDA	UniProt	pollen tube	1 2 3 4 5

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013831	SGNH hydrolase-type esterase domain
IPR001087	Lipase, GDSL

Mapman id	Description
26.28	misc.GDSL-motif lipase

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network