Gene: AT4G29830 (Arabidopsis thaliana)

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Gene Identifier
AT4G29830
Transcript Identifier
AT4G29830.1
Gene Type
Coding gene
Location
4 : 14597728-14599157 : positive

Family

Gene family
HOM03M000141
(335 genes in 16 species)
specific family

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Descriptions

Description
Transducin/WD40 repeat-like superfamily protein
Curated Summary
The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin.
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Identifiers

Identifier Name
aliasSKI8
aliasVIP3
aliasA. thaliana homolog of yeast SKI8
aliasvernalization independence 3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009910IGI, IMPGene Ontologynegative regulation of flower development1 2
GO:0010452IMPGene Ontologyhistone H3-K36 methylation1
GO:0051568IMPGene Ontologyhistone H3-K4 methylation1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166ISSGene Ontologynucleotide binding1
GO:0005515IPI, IEAGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISMGene Ontologycytoplasm1
GO:0005834ISSGene Ontologyheterotrimeric G-protein complex1
GO:0080008IPIGene OntologyCul4-RING ubiquitin ligase complex1
GO:0005829IDAGene Ontologycytosol1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015943WD40/YVTN repeat-like-containing domain
IPR001680WD40 repeat
IPR020472G-protein beta WD-40 repeat
IPR017986WD40-repeat-containing domain
IPR019775WD40 repeat, conserved site

Mapman id Description
30.5signalling.G-proteins
No SignalP domains detected for this gene.