Gene: AT4G29040 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G29040
Transcript Identifier
AT4G29040.1
Gene Type
Coding gene
Location
4 : 14312369-14314386 : positive

Family

Gene family
HOM03M000030
(1059 genes in 16 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
regulatory particle AAA-ATPase 2A
Curated Summary
RPT2a encodes the 26S proteasome subunit. It is required for root meristem maintenance, and regulates gametogenesis. RPT2a is also shown to regulate gene silencing via DNA methylation.
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Identifiers

Identifier Name
aliasregulatory particle AAA-ATPase 2A
aliasRPT2a
uniprotQ9SL67
uniprotQ9SZD4

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006511RCA, TASGene Ontologyubiquitin-dependent protein catabolic process1 2
GO:0009933IMPUniProtmeristem structural organization1 2 3 4 5 6 7 8 9 10 11
GO:0009965IMPUniProtleaf morphogenesis1 2 3 4 5 6 7 8 9 10 11
GO:0010015IMPGene Ontologyroot morphogenesis1
GO:0010078IMPUniProtmaintenance of root meristem identity1 2 3 4 5 6 7 8 9 10 11
GO:0010311IMPUniProtlateral root formation1 2 3 4 5 6 7 8 9 10 11
GO:0035266IMPUniProtmeristem growth1 2 3 4 5 6 7 8 9 10 11
GO:0048367IMPGene Ontologyshoot system development1
GO:0048827IMPGene Ontologyphyllome development1
GO:0048829IMPUniProtroot cap development1 2 3 4 5 6 7 8 9 10 11
GO:0046686IEP, RCA, UniProtresponse to cadmium ion1 2 3 4 5 6 7 8 9 10 11 12
GO:0009408IMPUniProtresponse to heat1 2 3 4 5 6 7 8 9 10 11
GO:0043161IMP, RCA, UniProtproteasome-mediated ubiquitin-dependent protein catabolic process1 2 3 4 5 6 7 8 9 10 11 12
GO:0043248IMP, RCA, UniProtproteasome assembly1 2 3 4 5 6 7 8 9 10 11 12
GO:0048364IMPGene Ontologyroot development1
GO:0051788IMP, RCA, UniProtresponse to misfolded protein1 2 3 4 5 6 7 8 9 10 11 12
GO:0080129IMP, RCAGene Ontologyproteasome core complex assembly1 2
GO:0007292IGIUniProtfemale gamete generation1 2 3 4 5 6 7 8 9 10 11
GO:0048232IGIUniProtmale gamete generation1 2 3 4 5 6 7 8 9 10 11
GO:0090351IMPUniProtseedling development1 2 3 4 5 6 7 8 9 10 11
GO:0006094RCAGene Ontologygluconeogenesis1
GO:0006096RCAGene Ontologyglycolysis1
GO:0006635RCAGene Ontologyfatty acid beta-oxidation1
GO:0009407RCAGene Ontologytoxin catabolic process1
GO:0009651RCAGene Ontologyresponse to salt stress1
GO:0009853RCAGene Ontologyphotorespiration1
GO:0042023RCAGene OntologyDNA endoreduplication1
GO:0051510RCAGene Ontologyregulation of unidimensional cell growth1
GO:0060968IMPUniProtregulation of gene silencing1 2 3 4 5 6 7 8 9 10 11
GO:0045087IMPUniProtinnate immune response1 2 3 4 5 6 7 8 9 10
GO:0030163IEAUniProtprotein catabolic process1 2 3 4 5 6

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016887IGI, ISSGene OntologyATPase activity1 2
GO:0005524IEAUniProtATP binding1 2 3 4 5 6 7 8 9 10
GO:0017111IEAUniProtnucleoside-triphosphatase activity1 2 3 4 5 6 7 8 9 10
GO:0000166IEAInterPronucleotide binding
GO:0016787IEAInterProhydrolase activity
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03M000030
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03M000030
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03M000030
GO:0043168IEAPLAZA Homologyanion bindingHOM03M000030
GO:0043167IEAPLAZA Homologyion bindingHOM03M000030
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03M000030
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03M000030
GO:0003824IEAPLAZA Homologycatalytic activityHOM03M000030
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03M000030
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03M000030
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M000030
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03M000030
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03M000030
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03M000030
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03M000030
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03M000030
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03M000030
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03M000030
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03M000030
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03M000030
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03M000030

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, TAS, ISMUniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18
GO:0016020IDAUniProtmembrane1 2 3 4 5 6 7 8 9 10 11
GO:0000502IDAUniProtproteasome complex1 2 3 4 5 6 7 8 9 10 11
GO:0005829IDA, RCAUniProtcytosol1 2 3 4 5 6 7
GO:0008540IDAGene Ontologyproteasome regulatory particle, base subcomplex1
GO:0005737IEAUniProtcytoplasm1 2 3 4 5 6 7 8 9 10
GO:0005886IDAUniProtplasma membrane1 2 3 4 5 6

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003593AAA+ ATPase domain
IPR003959ATPase, AAA-type, core
IPR003960ATPase, AAA-type, conserved site
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR00593726S proteasome subunit P45

Mapman id Description
29.5.11.20protein.degradation.ubiquitin.proteasom
No SignalP domains detected for this gene.