PLAZA 3.0 Monocots gene overview : AT4G25100

Gene: AT4G25100 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G25100
Transcript Identifier: AT4G25100.1
Gene Type: Coding gene
Location: 4 : 12884649-12886501 : negative

Family

Gene family: HOM03M001026
(71 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: Fe superoxide dismutase 1

Curated Summary: Fe-superoxide dismutase

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Identifiers

Identifier	Name
alias	ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1
alias	Fe superoxide dismutase 1
alias	FSD1
alias	ATFSD1
uniprot	P21276

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006979	IDA	Gene Ontology	response to oxidative stress	1
GO:0046688	IEP	UniProt	response to copper ion	1 2 3 4 5 6 7 8 9 10
GO:0046686	IEP	UniProt	response to cadmium ion	1 2 3 4 5 6 7 8 9 10
GO:0019430	IC	Gene Ontology	removal of superoxide radicals	1
GO:0007623	IEP	UniProt	circadian rhythm	1 2 3 4 5 6 7 8 9 10
GO:0009642	IEP	UniProt	response to light intensity	1 2 3 4 5 6 7 8 9 10
GO:0010193	IEP	UniProt	response to ozone	1 2 3 4 5 6 7 8 9 10
GO:0006801	IEA	UniProt	superoxide metabolic process	1 2 3 4 5 6 7 8 9
GO:0055114	IEA	InterPro	oxidation-reduction process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005507	IDA	UniProt	copper ion binding	1 2 3 4 5 6 7 8 9 10
GO:0004784	IMP, IDA, IEA,	UniProt	superoxide dismutase activity	1 2 3 4 5 6 7 8 9 10 11
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0046872	IEA	InterPro	metal ion binding
GO:0016721	IEA	PLAZA Homology	oxidoreductase activity, acting on superoxide radicals as acceptor	HOM03M001026

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	IDA, ISM,	UniProt	mitochondrion	1 2 3 4 5 6 7 8 9 10 11
GO:0009507	IDA, ISM, NAS	Gene Ontology	chloroplast	1 2 3
GO:0009579	IDA	UniProt	thylakoid	1 2 3 4 5 6 7 8 9 10
GO:0009941	IDA	UniProt	chloroplast envelope	1 2 3 4 5 6 7 8 9 10
GO:0005886	IDA	UniProt	plasma membrane	1 2 3 4 5 6 7 8 9 10
GO:0009570	IDA	UniProt	chloroplast stroma	1 2 3 4 5 6 7 8 9 10
GO:0005737	IDA	Gene Ontology	cytoplasm	1
GO:0005829	RCA	Gene Ontology	cytosol	1
GO:0031969	IEA	UniProt	chloroplast membrane	1 2 3 4 5 6 7 8 9

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR019832	Manganese/iron superoxide dismutase, C-terminal
IPR001189	Manganese/iron superoxide dismutase
IPR019831	Manganese/iron superoxide dismutase, N-terminal
IPR019833	Manganese/iron superoxide dismutase, binding site

Mapman id	Description
21.6	redox.dismutases and catalases

No SignalP domains detected for this gene.