PLAZA 3.0 Monocots gene overview : AT4G24770

Gene: AT4G24770 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G24770
Transcript Identifier: AT4G24770.1
Gene Type: Coding gene
Location: 4 : 12766223-12767952 : negative

Family

Gene family: HOM03M000068
(644 genes in 16 species)
specific family

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Descriptions

Description: 31-kDa RNA binding protein

Curated Summary: Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs.

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Identifiers

Identifier	Name
alias	RBP31
alias	ATRBP31
alias	ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD
alias	ATRBP33
alias	CP31
alias	31-kDa RNA binding protein
uniprot	Q04836

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0045087	IDA	UniProt	innate immune response	1 2 3 4 5 6 7
GO:0009451	IMP	Gene Ontology	RNA modification	1
GO:0009073	RCA	Gene Ontology	aromatic amino acid family biosynthetic process	1
GO:0009965	RCA	Gene Ontology	leaf morphogenesis	1
GO:0016226	RCA	Gene Ontology	iron-sulfur cluster assembly	1
GO:0030154	RCA	Gene Ontology	cell differentiation	1
GO:0045036	RCA	Gene Ontology	protein targeting to chloroplast	1
GO:0045893	RCA	Gene Ontology	positive regulation of transcription, DNA-dependent	1
GO:0009631	IMP	UniProt	cold acclimation	1 2 3 4 5 6 7
GO:0016553	IMP	UniProt	base conversion or substitution editing	1 2 3 4 5 6 7
GO:0043489	IMP	UniProt	RNA stabilization	1 2 3 4 5 6 7
GO:0006396	TAS	UniProt	RNA processing	1 2 3 4 5 6 7
GO:0006397	IEA	UniProt	mRNA processing	1 2 3 4 5 6

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003723	IDA, ISS, TAS	Gene Ontology	RNA binding	1 2 3
GO:0008266	IDA	UniProt	poly(U) RNA binding	1 2 3 4 5 6 7
GO:0000166	IEA	UniProt	nucleotide binding	1 2 3 4 5 6
GO:0003676	IEA	InterPro	nucleic acid binding
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000068
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000068
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000068
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000068

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IDA, ISM	Gene Ontology	chloroplast	1 2
GO:0009579	IDA	Gene Ontology	thylakoid	1
GO:0009941	IDA	UniProt	chloroplast envelope	1 2 3 4 5 6 7
GO:0009535	IDA	UniProt	chloroplast thylakoid membrane	1 2 3 4 5 6 7
GO:0009570	IDA	UniProt	chloroplast stroma	1 2 3 4 5 6 7
GO:0030529	IEA	UniProt	ribonucleoprotein complex	1 2 3 4 5 6

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding, alpha-beta plait

Mapman id	Description
27.4	RNA.RNA binding

No SignalP domains detected for this gene.