Gene: AT4G24560 (Arabidopsis thaliana)

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Gene Identifier
AT4G24560
Transcript Identifier
AT4G24560.1
Gene Type
Coding gene
Location
4 : 12679493-12684528 : negative

Family

Gene family
HOM03M000305
(182 genes in 16 species)
specific family
Subfamily
ORTHO03M011537
(4 genes in 4 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
ubiquitin-specific protease 16
Curated Summary
Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation.
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Identifiers

Identifier Name
aliasubiquitin-specific protease 16
aliasUBP16
uniprotQ9SB51

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0008283IGIUniProtcell proliferation1 2 3 4
GO:0009908IGIUniProtflower development1 2 3 4
GO:0048364IGIUniProtroot development1 2 3 4
GO:0048366IGIUniProtleaf development1 2 3 4
GO:0048367IGIGene Ontologyshoot system development1
GO:0000956RCAGene Ontologynuclear-transcribed mRNA catabolic process1
GO:0006486RCAGene Ontologyprotein glycosylation1
GO:0006487RCAGene Ontologyprotein N-linked glycosylation1
GO:0009651IEPUniProtresponse to salt stress1 2 3 4
GO:0016579IDAUniProtprotein deubiquitination1 2 3 4
GO:1901000IMPUniProtregulation of response to salt stress1 2 3 4
GO:0006511IEAUniProtubiquitin-dependent protein catabolic process1 2 3
GO:0044265IEAPLAZA Homologycellular macromolecule catabolic processHOM03M000305
GO:0030163IEAPLAZA Homologyprotein catabolic processHOM03M000305
GO:0019941IEAPLAZA Homologymodification-dependent protein catabolic processHOM03M000305
GO:0051603IEAPLAZA Homologyproteolysis involved in cellular protein catabolic processHOM03M000305
GO:0044257IEAPLAZA Homologycellular protein catabolic processHOM03M000305
GO:0009057IEAPLAZA Homologymacromolecule catabolic processHOM03M000305
GO:0043632IEAPLAZA Homologymodification-dependent macromolecule catabolic processHOM03M000305

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004843ISSGene Ontologyubiquitin-specific protease activity1
GO:0004221IDA, IEA, UniProtubiquitin thiolesterase activity1 2 3 4
GO:0005515IPIGene Ontologyprotein binding1
GO:0008234IEAUniProtcysteine-type peptidase activity1 2 3
GO:0046872IEAUniProtmetal ion binding1 2 3
GO:0016790IEAPLAZA Homologythiolester hydrolase activityHOM03M000305

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576ISMGene Ontologyextracellular region1
GO:0016021IEAUniProtintegral to membrane1 2 3

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002893Zinc finger, MYND-type
IPR001394Ubiquitin carboxyl-terminal hydrolases family 2
IPR018200Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site

Mapman id Description
29.5.11.5protein.degradation.ubiquitin.ubiquitin protease
No SignalP domains detected for this gene.