Gene: AT4G20380 (Arabidopsis thaliana)

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Gene Identifier
AT4G20380
Transcript Identifier
AT4G20380.8
Gene Type
Coding gene
Location
4 : 11005027-11006438 : positive

Family

Gene family
HOM03M001216
(61 genes in 16 species)
specific family

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Descriptions

Description
LSD1 zinc finger family protein
Curated Summary
LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge
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Identifiers

Identifier Name
aliasLSD1
aliasLESION SIMULATING DISEASE
uniprotP94077

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009862IEPGene Ontologysystemic acquired resistance, salicylic acid mediated signaling pathway1
GO:0002240IMPGene Ontologyresponse to molecule of oomycetes origin1
GO:0009626IEA, IMPUniProtplant-type hypersensitive response1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0001666IMPGene Ontologyresponse to hypoxia1
GO:0010310IMPGene Ontologyregulation of hydrogen peroxide metabolic process1
GO:0010602IMPGene Ontologyregulation of 1-aminocyclopropane-1-carboxylate metabolic process1
GO:0010618IMPGene Ontologyaerenchyma formation1
GO:0010104IMPGene Ontologyregulation of ethylene mediated signaling pathway1
GO:0043067IGIGene Ontologyregulation of programmed cell death1
GO:0043069IGIUniProtnegative regulation of programmed cell death1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0000303IMP, RCAGene Ontologyresponse to superoxide1 2
GO:0006914RCAGene Ontologyautophagy1
GO:0008219IMP, RCAGene Ontologycell death1 2
GO:0009651RCAGene Ontologyresponse to salt stress1
GO:0009733RCAGene Ontologyresponse to auxin1
GO:0009737RCAGene Ontologyresponse to abscisic acid1
GO:0009743RCAGene Ontologyresponse to carbohydrate1
GO:0009751RCAGene Ontologyresponse to salicylic acid1
GO:0009863RCAGene Ontologysalicylic acid mediated signaling pathway1
GO:0009873RCAGene Ontologyethylene mediated signaling pathway1
GO:0006915IEAUniProtapoptotic process1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700TASGene Ontologysequence-specific DNA binding transcription factor activity1
GO:0005515IPIGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576ISMGene Ontologyextracellular region1
GO:0005737IEAUniProtcytoplasm1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0005634IEAUniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005735Zinc finger, LSD1-type

Mapman id Description
27.3.99RNA.regulation of transcription.unclassified
No SignalP domains detected for this gene.
DatabaseType
PlantTFDBLSD