PLAZA 3.0 Monocots gene overview : AT4G20270

Gene: AT4G20270 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G20270
Transcript Identifier: AT4G20270.1
Gene Type: Coding gene
Location: 4 : 10949822-10952924 : positive

Family

Gene family: HOM03M000005
(2350 genes in 16 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: Leucine-rich receptor-like protein kinase family protein

Curated Summary: Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function.

Identifiers

Identifier	Name
alias	BARELY ANY MERISTEM 3
alias	BAM3
uniprot	O65440

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006468	ISS, IEA	Gene Ontology	protein phosphorylation	1
GO:0007169	ISS	Gene Ontology	transmembrane receptor protein tyrosine kinase signaling pathway	1
GO:0010075	IGI, RCA,	UniProt	regulation of meristem growth	1 2 3 4 5
GO:0048437	IGI	UniProt	floral organ development	1 2 3 4
GO:0000271	RCA	Gene Ontology	polysaccharide biosynthetic process	1
GO:0009825	RCA	Gene Ontology	multidimensional cell growth	1
GO:0009855	RCA	Gene Ontology	determination of bilateral symmetry	1
GO:0009932	RCA	Gene Ontology	cell tip growth	1
GO:0010014	RCA	Gene Ontology	meristem initiation	1
GO:0010073	RCA	Gene Ontology	meristem maintenance	1
GO:0010817	RCA	Gene Ontology	regulation of hormone levels	1
GO:0043481	RCA	Gene Ontology	anthocyanin accumulation in tissues in response to UV light	1
GO:0048653	RCA	Gene Ontology	anther development	1
GO:0048767	RCA	Gene Ontology	root hair elongation	1
GO:0071555	RCA	Gene Ontology	cell wall organization	1
GO:0030154	IEA	UniProt	cell differentiation	1 2 3
GO:0044260	IEA	PLAZA Homology	cellular macromolecule metabolic process	HOM03M000005
GO:0006796	IEA	PLAZA Homology	phosphate-containing compound metabolic process	HOM03M000005
GO:0006793	IEA	PLAZA Homology	phosphorus metabolic process	HOM03M000005
GO:0043170	IEA	PLAZA Homology	macromolecule metabolic process	HOM03M000005
GO:0044237	IEA	PLAZA Homology	cellular metabolic process	HOM03M000005
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03M000005
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03M000005
GO:0016310	IEA	PLAZA Homology	phosphorylation	HOM03M000005
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000005
GO:0043412	IEA	PLAZA Homology	macromolecule modification	HOM03M000005
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03M000005
GO:0044267	IEA	PLAZA Homology	cellular protein metabolic process	HOM03M000005
GO:0006464	IEA	PLAZA Homology	cellular protein modification process	HOM03M000005
GO:0036211	IEA	PLAZA Homology	protein modification process	HOM03M000005
GO:0019538	IEA	PLAZA Homology	protein metabolic process	HOM03M000005

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004674	IEA, ISS	UniProt	protein serine/threonine kinase activity	1 2 3 4
GO:0005524	IEA, ISS	UniProt	ATP binding	1 2 3 4
GO:0005515	IEA	InterPro	protein binding
GO:0004672	IEA	InterPro	protein kinase activity
GO:0016772	IEA	InterPro	transferase activity, transferring phosphorus-containing groups
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03M000005
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03M000005
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03M000005
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000005
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03M000005
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03M000005
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000005
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03M000005
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000005
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03M000005
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03M000005
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03M000005
GO:0016301	IEA	PLAZA Homology	kinase activity	HOM03M000005
GO:0016773	IEA	PLAZA Homology	phosphotransferase activity, alcohol group as acceptor	HOM03M000005
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000005
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03M000005
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000005
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03M000005
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000005
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000005
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03M000005
GO:0016740	IEA	PLAZA Homology	transferase activity	HOM03M000005
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03M000005

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	IEA, ISM	UniProt	plasma membrane	1 2 3 4
GO:0016021	IEA	UniProt	integral to membrane	1 2 3

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001611	Leucine-rich repeat
IPR003591	Leucine-rich repeat, typical subtype
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain
IPR025875	Leucine rich repeat 4
IPR008271	Serine/threonine-protein kinase, active site
IPR013210	Leucine-rich repeat-containing N-terminal, type 2
IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain

Mapman id	Description
33.99	development.unspecified

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network