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WorkbenchGene: AT4G16515 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT4G16515
- Transcript Identifier
- AT4G16515.1
- Gene Type
- Coding gene
- Location
- 4 : 9305386-9305646 : negative
Family
- Gene family
Descriptions
- Curated Summary
-
Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Identifiers
| Identifier | Name |
|---|---|
| alias | root meristem growth factor 6 |
| alias | CLE-like 6 |
| alias | GLV1 |
| alias | CLEL 6 |
| alias | RGF6 |
| alias | GOLVEN 1 |
| uniprot | Q93VK8 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0008284 | IDA | UniProt | positive regulation of cell proliferation | 1 2 3 4 |
| GO:0030154 | IDA | UniProt | cell differentiation | 1 2 3 4 |
| GO:0022622 | IMP | Gene Ontology | root system development | 1 |
| GO:0048527 | IMP | UniProt | lateral root development | 1 2 3 4 |
| GO:0009958 | IMP | UniProt | positive gravitropism | 1 2 3 4 |
| GO:0032880 | IDA | UniProt | regulation of protein localization | 1 2 3 4 |
| GO:2000012 | IMP | UniProt | regulation of auxin polar transport | 1 2 3 4 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0008083 | IDA | UniProt | growth factor activity | 1 2 3 4 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005576 | ISM | Gene Ontology | extracellular region | 1 |
| GO:0005615 | ISS | UniProt | extracellular space | 1 2 3 4 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
No InterPro domains detected for this gene.
| Mapman id | Description |
|---|---|
| 35.2 | not assigned.unknown |
| SignalP | Description |
|---|---|
| SignalP-noTM | Signal Peptide detected using noTM network |