Gene: AT4G16250 (Arabidopsis thaliana)

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Gene Identifier
AT4G16250
Transcript Identifier
AT4G16250.1
Gene Type
Coding gene
Location
4 : 9195602-9199486 : negative

Family

Gene family
HOM03M001131
(64 genes in 14 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
phytochrome D
Curated Summary
Encodes a phytochrome photoreceptor with a function similar to that of phyB that absorbs the red/far-red part of the light spectrum and is involved in light responses. It cannot compensate for phyB loss in Arabidopsis but can substitute for tobacco phyB in vivo.
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Identifiers

Identifier Name
aliasphytochrome D
aliasPHYD
uniprotP42497

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEA, ISSUniProtregulation of transcription, DNA-dependent1 2 3 4
GO:0010017IGI, RCAGene Ontologyred or far-red light signaling pathway1 2
GO:0007623RCAGene Ontologycircadian rhythm1
GO:0009630RCAGene Ontologygravitropism1
GO:0010155RCAGene Ontologyregulation of proton transport1
GO:0046777RCAGene Ontologyprotein autophosphorylation1
GO:0009584IEAUniProtdetection of visible light1 2 3
GO:0000160IEAUniProtphosphorelay signal transduction system1 2 3
GO:0018298IEAUniProtprotein-chromophore linkage1 2 3
GO:0017006IEAUniProtprotein-tetrapyrrole linkage1 2 3
GO:0023014IEAUniProtsignal transduction by phosphorylation1 2 3
GO:0006351IEAUniProttranscription, DNA-templated1 2 3
GO:0007165IEAInterProsignal transduction
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M001131

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004871ISS, IEAGene Ontologysignal transducer activity1
GO:0008020ISSGene OntologyG-protein coupled photoreceptor activity1
GO:0005515IPI, IEAGene Ontologyprotein binding1
GO:0042802IPIGene Ontologyidentical protein binding1
GO:0009883IGIUniProtred or far-red light photoreceptor activity1 2 3 4
GO:0005524IEAUniProtATP binding1 2 3
GO:0000155IEAUniProtphosphorelay sensor kinase activity1 2 3
GO:0009881IEAPLAZA Homologyphotoreceptor activityHOM03M001131

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDAUniProtnucleus1 2 3 4
GO:0016020IEAUniProtmembrane1 2 3

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR005467Signal transduction histidine kinase, core
IPR001294Phytochrome
IPR013654PAS fold-2
IPR003018GAF domain
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR013516Phytochrome chromophore binding site
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR013767PAS fold
IPR016132Phytochrome chromophore attachment domain
IPR013515Phytochrome, central region

Mapman id Description
30.11signalling.light
No SignalP domains detected for this gene.