PLAZA 3.0 Monocots gene overview : AT4G13930

Gene: AT4G13930 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G13930
Transcript Identifier: AT4G13930.1
Gene Type: Coding gene
Location: 4 : 8048013-8050021 : negative

Family

Gene family: HOM03M000666
(103 genes in 16 species)
specific family
Subfamily: ORTHO03M000221
(20 genes in 15 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description: serine hydroxymethyltransferase 4

Curated Summary: Encodes a serine hydroxymethyltransferase maximally expressed in root

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Identifiers

Identifier	Name
alias	SHM4
alias	serine hydroxymethyltransferase 4
uniprot	O23254

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006544	IEA, ISS	UniProt	glycine metabolic process	1 2 3 4 5 6 7 8
GO:0006563	IEA, ISS	UniProt	L-serine metabolic process	1 2 3 4 5 6 7 8
GO:0007623	IEP	UniProt	circadian rhythm	1 2 3 4 5 6 7 8
GO:0046686	IEP	UniProt	response to cadmium ion	1 2 3 4 5 6 7 8
GO:0035999	IEA	UniProt	tetrahydrofolate interconversion	1 2 3 4 5 6 7

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004372	IEA, ISS	UniProt	glycine hydroxymethyltransferase activity	1 2 3 4 5 6 7 8
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0030170	IEA	UniProt	pyridoxal phosphate binding	1 2 3 4 5 6 7
GO:0003824	IEA	InterPro	catalytic activity
GO:0016742	IEA	PLAZA Homology	hydroxymethyl-, formyl- and related transferase activity	HOM03M000666

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1
GO:0005829	IDA, ISS,	UniProt	cytosol	1 2 3 4 5 6 7 8 9
GO:0016020	IDA	Gene Ontology	membrane	1
GO:0005886	IDA	UniProt	plasma membrane	1 2 3 4 5 6 7 8
GO:0009506	IDA	UniProt	plasmodesma	1 2 3 4 5 6 7 8

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001085	Serine hydroxymethyltransferase
IPR015424	Pyridoxal phosphate-dependent transferase
IPR015422	Pyridoxal phosphate-dependent transferase, major region, subdomain 2
IPR019798	Serine hydroxymethyltransferase, pyridoxal phosphate binding site
IPR015421	Pyridoxal phosphate-dependent transferase, major region, subdomain 1

Mapman id	Description
25.1	C1-metabolism.glycine hydroxymethyltransferase

No SignalP domains detected for this gene.