PLAZA 3.0 Monocots gene overview : AT4G11140

Gene: AT4G11140 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G11140
Transcript Identifier: AT4G11140.1
Gene Type: Coding gene
Location: 4 : 6794930-6795793 : negative

Family

Gene family: HOM03M000014
(1785 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: cytokinin response factor 1

Curated Summary: encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).

Identifiers

Identifier	Name
alias	cytokinin response factor 1
alias	CRF1
uniprot	O82503

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	ISS, IEA	Gene Ontology	regulation of transcription, DNA-dependent	1
GO:0042991	IDA, RCA,	UniProt	transcription factor import into nucleus	1 2 3 4 5
GO:0048366	IMP, RCA	Gene Ontology	leaf development	1 2
GO:0048825	IMP, RCA,	UniProt	cotyledon development	1 2 3 4 5
GO:0006406	RCA	Gene Ontology	mRNA export from nucleus	1
GO:0006606	RCA	Gene Ontology	protein import into nucleus	1
GO:0009220	RCA	Gene Ontology	pyrimidine ribonucleotide biosynthetic process	1
GO:0009640	RCA	Gene Ontology	photomorphogenesis	1
GO:0009694	RCA	Gene Ontology	jasmonic acid metabolic process	1
GO:0009737	RCA	Gene Ontology	response to abscisic acid	1
GO:0009753	RCA	Gene Ontology	response to jasmonic acid	1
GO:0009793	RCA	Gene Ontology	embryo development ending in seed dormancy	1
GO:0009845	RCA	Gene Ontology	seed germination	1
GO:0009909	RCA	Gene Ontology	regulation of flower development	1
GO:0009933	RCA	Gene Ontology	meristem structural organization	1
GO:0010162	RCA	Gene Ontology	seed dormancy process	1
GO:0010182	RCA	Gene Ontology	sugar mediated signaling pathway	1
GO:0010228	RCA	Gene Ontology	vegetative to reproductive phase transition of meristem	1
GO:0010564	RCA	Gene Ontology	regulation of cell cycle process	1
GO:0016567	RCA	Gene Ontology	protein ubiquitination	1
GO:0019915	RCA	Gene Ontology	lipid storage	1
GO:0050826	RCA	Gene Ontology	response to freezing	1
GO:0051301	RCA	Gene Ontology	cell division	1
GO:0009736	IEA	UniProt	cytokinin-activated signaling pathway	1 2 3
GO:0009873	IEA	UniProt	ethylene mediated signaling pathway	1 2 3
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3
GO:0010468	IEA	PLAZA Homology	regulation of gene expression	HOM03M000014
GO:0006807	IEA	PLAZA Homology	nitrogen compound metabolic process	HOM03M000014
GO:0010467	IEA	PLAZA Homology	gene expression	HOM03M000014
GO:0051252	IEA	PLAZA Homology	regulation of RNA metabolic process	HOM03M000014
GO:0051171	IEA	PLAZA Homology	regulation of nitrogen compound metabolic process	HOM03M000014
GO:0044260	IEA	PLAZA Homology	cellular macromolecule metabolic process	HOM03M000014
GO:0019222	IEA	PLAZA Homology	regulation of metabolic process	HOM03M000014
GO:0019219	IEA	PLAZA Homology	regulation of nucleobase-containing compound metabolic process	HOM03M000014
GO:0034641	IEA	PLAZA Homology	cellular nitrogen compound metabolic process	HOM03M000014
GO:0034645	IEA	PLAZA Homology	cellular macromolecule biosynthetic process	HOM03M000014
GO:0050789	IEA	PLAZA Homology	regulation of biological process	HOM03M000014
GO:0009889	IEA	PLAZA Homology	regulation of biosynthetic process	HOM03M000014
GO:0018130	IEA	PLAZA Homology	heterocycle biosynthetic process	HOM03M000014
GO:0019438	IEA	PLAZA Homology	aromatic compound biosynthetic process	HOM03M000014
GO:0043170	IEA	PLAZA Homology	macromolecule metabolic process	HOM03M000014
GO:0046483	IEA	PLAZA Homology	heterocycle metabolic process	HOM03M000014
GO:0016070	IEA	PLAZA Homology	RNA metabolic process	HOM03M000014
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03M000014
GO:0044271	IEA	PLAZA Homology	cellular nitrogen compound biosynthetic process	HOM03M000014
GO:0065007	IEA	PLAZA Homology	biological regulation	HOM03M000014
GO:0010556	IEA	PLAZA Homology	regulation of macromolecule biosynthetic process	HOM03M000014
GO:0006139	IEA	PLAZA Homology	nucleobase-containing compound metabolic process	HOM03M000014
GO:0032774	IEA	PLAZA Homology	RNA biosynthetic process	HOM03M000014
GO:0006725	IEA	PLAZA Homology	cellular aromatic compound metabolic process	HOM03M000014
GO:1901576	IEA	PLAZA Homology	organic substance biosynthetic process	HOM03M000014
GO:0090304	IEA	PLAZA Homology	nucleic acid metabolic process	HOM03M000014
GO:0080090	IEA	PLAZA Homology	regulation of primary metabolic process	HOM03M000014
GO:2001141	IEA	PLAZA Homology	regulation of RNA biosynthetic process	HOM03M000014
GO:0044237	IEA	PLAZA Homology	cellular metabolic process	HOM03M000014
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03M000014
GO:0009058	IEA	PLAZA Homology	biosynthetic process	HOM03M000014
GO:0009059	IEA	PLAZA Homology	macromolecule biosynthetic process	HOM03M000014
GO:2000112	IEA	PLAZA Homology	regulation of cellular macromolecule biosynthetic process	HOM03M000014
GO:0060255	IEA	PLAZA Homology	regulation of macromolecule metabolic process	HOM03M000014
GO:0031323	IEA	PLAZA Homology	regulation of cellular metabolic process	HOM03M000014
GO:0031326	IEA	PLAZA Homology	regulation of cellular biosynthetic process	HOM03M000014
GO:1901360	IEA	PLAZA Homology	organic cyclic compound metabolic process	HOM03M000014
GO:1901362	IEA	PLAZA Homology	organic cyclic compound biosynthetic process	HOM03M000014
GO:0034654	IEA	PLAZA Homology	nucleobase-containing compound biosynthetic process	HOM03M000014
GO:0050794	IEA	PLAZA Homology	regulation of cellular process	HOM03M000014
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000014
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03M000014
GO:0044249	IEA	PLAZA Homology	cellular biosynthetic process	HOM03M000014

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA, ISS	UniProt	DNA binding	1 2 3 4
GO:0003700	ISS, IEA,	UniProt	sequence-specific DNA binding transcription factor activity	1 2 3 4
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000014
GO:0003676	IEA	PLAZA Homology	nucleic acid binding	HOM03M000014
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000014
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000014
GO:0001071	IEA	PLAZA Homology	nucleic acid binding transcription factor activity	HOM03M000014

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM, ISS	UniProt	nucleus	1 2 3 4 5
GO:0005737	IEA	UniProt	cytoplasm	1 2 3

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001471	AP2/ERF domain
IPR016177	DNA-binding domain

Mapman id	Description
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	AP2-EREBP
PlantTFDB	ERF