Gene: AT4G05420 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G05420
Transcript Identifier
AT4G05420.1
Gene Type
Coding gene
Location
4 : 2746288-2752663 : positive

Family

Gene family
HOM03M003122
(28 genes in 15 species)
specific family
Duplication type
Block duplicate

Loading...please wait

Descriptions

Description
damaged DNA binding protein 1A
Curated Summary
Structurally similar to damaged DNA binding proteins. DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. DDB1a is shown to be RUB-modified.
Show more...

Identifiers

Identifier Name
aliasdamaged DNA binding protein 1A
aliasDDB1A
uniprotQ9M0V3

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010100IGI, RCA, UniProtnegative regulation of photomorphogenesis1 2 3 4 5 6 7 8 9 10 11
GO:0045892IPIUniProtnegative regulation of transcription, DNA-dependent1 2 3 4 5 6 7 8 9 10
GO:0000278RCAGene Ontologymitotic cell cycle1
GO:0000911RCAGene Ontologycytokinesis by cell plate formation1
GO:0003002RCAGene Ontologyregionalization1
GO:0006281IEA, RCAUniProtDNA repair1 2 3 4 5 6 7 8 9 10
GO:0006486RCAGene Ontologyprotein glycosylation1
GO:0007155RCAGene Ontologycell adhesion1
GO:0008284RCAGene Ontologypositive regulation of cell proliferation1
GO:0009630RCAGene Ontologygravitropism1
GO:0009639RCAGene Ontologyresponse to red or far red light1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0033043RCAGene Ontologyregulation of organelle organization1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0048449RCAGene Ontologyfloral organ formation1
GO:0048608RCAGene Ontologyreproductive structure development1
GO:0016567IEAUniProtprotein ubiquitination1 2 3 4 5 6 7 8 9
GO:0009585IEAUniProtred, far-red light phototransduction1 2 3 4 5 6 7 8 9

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEA, ISSUniProtDNA binding1 2 3 4 5 6 7 8 9 10
GO:0005515IPI, IEAGene Ontologyprotein binding1
GO:0003676IEAInterPronucleic acid binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISS, IDA, IPI, ISM, IEAUniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12
GO:0080008IPIUniProtCul4-RING ubiquitin ligase complex1 2 3 4 5 6 7 8 9 10
GO:0005829IDAUniProtcytosol1 2 3 4 5 6 7 8 9 10

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR017986WD40-repeat-containing domain
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminal
IPR015943WD40/YVTN repeat-like-containing domain

Mapman id Description
20.2.5stress.abiotic.light
29.5.11.4.6protein.degradation.ubiquitin.E3.DCX
No SignalP domains detected for this gene.