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WorkbenchGene: AT4G04890 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT4G04890
- Transcript Identifier
- AT4G04890.1
- Gene Type
- Coding gene
- Location
- 4 : 2476970-2480090 : negative
Family
- Gene family
- Subfamily
- Duplication type
- Block duplicate
Descriptions
- Description
-
protodermal factor 2
- Curated Summary
-
Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.
Identifiers
| Identifier | Name |
|---|---|
| alias | protodermal factor 2 |
| alias | PDF2 |
| uniprot | Q93V99 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0006355 | ISS, IEA | Gene Ontology | regulation of transcription, DNA-dependent | 1 |
| GO:0009913 | IMP | UniProt | epidermal cell differentiation | 1 2 3 4 5 6 |
| GO:0048825 | IGI | UniProt | cotyledon development | 1 2 3 4 5 6 |
| GO:0006473 | RCA | Gene Ontology | protein acetylation | 1 |
| GO:0009793 | RCA | Gene Ontology | embryo development ending in seed dormancy | 1 |
| GO:0010027 | RCA | Gene Ontology | thylakoid membrane organization | 1 |
| GO:0010228 | RCA | Gene Ontology | vegetative to reproductive phase transition of meristem | 1 |
| GO:0016226 | RCA | Gene Ontology | iron-sulfur cluster assembly | 1 |
| GO:0048481 | RCA | Gene Ontology | ovule development | 1 |
| GO:0048497 | IGI | UniProt | maintenance of floral organ identity | 1 2 3 4 5 6 |
| GO:0006351 | IEA | UniProt | transcription, DNA-templated | 1 2 3 4 5 |
| GO:2001141 | IEA | PLAZA Homology | regulation of RNA biosynthetic process | HOM03M000193 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0003677 | IDA, ISSIEA, | UniProt | DNA binding | 1 2 3 4 5 6 7 |
| GO:0003700 | ISS, IEA, | UniProt | sequence-specific DNA binding transcription factor activity | 1 2 3 4 5 6 |
| GO:0008289 | IEA | UniProt | lipid binding | 1 2 3 4 5 |
| GO:0043565 | IEA | UniProt | sequence-specific DNA binding | 1 2 3 4 5 |
Cellular Component
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| Mapman id | Description |
|---|---|
| 27.3.22 | RNA.regulation of transcription.HB,Homeobox transcription factor family |
No SignalP domains detected for this gene.