Gene: AT4G04890 (Arabidopsis thaliana)

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Gene Identifier
AT4G04890
Transcript Identifier
AT4G04890.1
Gene Type
Coding gene
Location
4 : 2476970-2480090 : negative

Family

Gene family
HOM03M000193
(259 genes in 14 species)
specific family
Subfamily
ORTHO03M000034
(55 genes in 14 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
protodermal factor 2
Curated Summary
Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.
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Identifiers

Identifier Name
aliasprotodermal factor 2
aliasPDF2
uniprotQ93V99

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355ISS, IEAGene Ontologyregulation of transcription, DNA-dependent1
GO:0009913IMPUniProtepidermal cell differentiation1 2 3 4 5 6
GO:0048825IGIUniProtcotyledon development1 2 3 4 5 6
GO:0006473RCAGene Ontologyprotein acetylation1
GO:0009793RCAGene Ontologyembryo development ending in seed dormancy1
GO:0010027RCAGene Ontologythylakoid membrane organization1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0016226RCAGene Ontologyiron-sulfur cluster assembly1
GO:0048481RCAGene Ontologyovule development1
GO:0048497IGIUniProtmaintenance of floral organ identity1 2 3 4 5 6
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M000193

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IDA, ISSIEA, UniProtDNA binding1 2 3 4 5 6 7
GO:0003700ISS, IEA, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6
GO:0008289IEAUniProtlipid binding1 2 3 4 5
GO:0043565IEAUniProtsequence-specific DNA binding1 2 3 4 5

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISM, ISSUniProtnucleus1 2 3 4 5 6 7

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR023393START-like domain
IPR001356Homeobox domain
IPR002913START domain
IPR009057Homeodomain-like
IPR017970Homeobox, conserved site

Mapman id Description
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBHB
PlantTFDBHD-ZIP