Gene: AT4G02020 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G02020
Transcript Identifier
AT4G02020.1
Gene Type
Coding gene
Location
4 : 886693-891743 : positive

Family

Gene family
HOM03M001993
(41 genes in 16 species)
specific family
Subfamily
ORTHO03M000922
(11 genes in 9 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
SET domain-containing protein
Curated Summary
Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG.
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Identifiers

Identifier Name
aliasSWINGER
aliasSET DOMAIN-CONTAINING PROTEIN 10
aliasSDG10
aliasEZA1
aliasSWN
uniprotQ9ZSM8

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006349IMP, RCA, UniProtregulation of gene expression by genetic imprinting1 2 3 4 5 6
GO:0009960IGIUniProtendosperm development1 2 3 4 5
GO:0000956RCAGene Ontologynuclear-transcribed mRNA catabolic process1
GO:0006306RCAGene OntologyDNA methylation1
GO:0006342RCAGene Ontologychromatin silencing1
GO:0006355RCAGene Ontologyregulation of transcription, DNA-dependent1
GO:0007267RCAGene Ontologycell-cell signaling1
GO:0009616RCAGene Ontologyvirus induced gene silencing1
GO:0010048RCAGene Ontologyvernalization response1
GO:0010050RCAGene Ontologyvegetative phase change1
GO:0010267RCAGene Ontologyproduction of ta-siRNAs involved in RNA interference1
GO:0016571RCAGene Ontologyhistone methylation1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0043687RCAGene Ontologypost-translational protein modification1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0034968IEAUniProthistone lysine methylation1 2 3 4
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5
GO:0005515IPI, IEAGene Ontologyprotein binding1
GO:0003727IDAUniProtsingle-stranded RNA binding1 2 3 4 5
GO:0003682IEAUniProtchromatin binding1 2 3 4
GO:0018024IEAUniProthistone-lysine N-methyltransferase activity1 2 3 4

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2
GO:0005677IDAUniProtchromatin silencing complex1 2 3 4 5
GO:0009506IDAUniProtplasmodesma1 2 3 4 5
GO:0031519IEAUniProtPcG protein complex1 2 3 4

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001214SET domain
IPR025778Histone-lysine N-methyltransferase, EZ
IPR026489CXC domain
IPR001005SANT/Myb domain

Mapman id Description
27.3.65RNA.regulation of transcription.Polycomb Group (PcG)
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBSET