Gene: AT3G56860 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G56860
Transcript Identifier
AT3G56860.3
Gene Type
Coding gene
Location
3 : 21050708-21052144 : negative

Family

Gene family
HOM03M000068
(644 genes in 16 species)
specific family
Subfamily
ORTHO03M003471
(8 genes in 8 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
UBP1-associated protein 2A
Curated Summary
encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.
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Identifiers

Identifier Name
aliasUBA2A
aliasUBP1-associated protein 2A

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0048255NASGene OntologymRNA stabilization1
GO:0009738TASGene Ontologyabscisic acid-activated signaling pathway1
GO:0006952IMPGene Ontologydefense response1
GO:0008219IMPGene Ontologycell death1
GO:0009693IMPGene Ontologyethylene biosynthetic process1
GO:0010150IMPGene Ontologyleaf senescence1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723ISSGene OntologyRNA binding1
GO:0005515IPIGene Ontologyprotein binding1
GO:0017091IDAGene OntologyAU-rich element binding1
GO:0000166IEAInterPronucleotide binding
GO:0003676IEAInterPronucleic acid binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M000068
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03M000068
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03M000068
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03M000068

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISMGene Ontologycytoplasm1
GO:0005634IDAGene Ontologynucleus1
GO:0005829IDAGene Ontologycytosol1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000504RNA recognition motif domain
IPR012677Nucleotide-binding, alpha-beta plait

Mapman id Description
27.4RNA.RNA binding
No SignalP domains detected for this gene.