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WorkbenchGene: AT3G56860 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT3G56860
- Transcript Identifier
- AT3G56860.3
- Gene Type
- Coding gene
- Location
- 3 : 21050708-21052144 : negative
Family
- Gene family
- Subfamily
- Duplication type
- Block duplicate
Descriptions
- Description
-
UBP1-associated protein 2A
- Curated Summary
-
encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.
Identifiers
| Identifier | Name |
|---|---|
| alias | UBA2A |
| alias | UBP1-associated protein 2A |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0048255 | NAS | Gene Ontology | mRNA stabilization | 1 |
| GO:0009738 | TAS | Gene Ontology | abscisic acid-activated signaling pathway | 1 |
| GO:0006952 | IMP | Gene Ontology | defense response | 1 |
| GO:0008219 | IMP | Gene Ontology | cell death | 1 |
| GO:0009693 | IMP | Gene Ontology | ethylene biosynthetic process | 1 |
| GO:0010150 | IMP | Gene Ontology | leaf senescence | 1 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0003723 | ISS | Gene Ontology | RNA binding | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
| GO:0017091 | IDA | Gene Ontology | AU-rich element binding | 1 |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:1901265 | IEA | PLAZA Homology | nucleoside phosphate binding | HOM03M000068 |
| GO:1901363 | IEA | PLAZA Homology | heterocyclic compound binding | HOM03M000068 |
| GO:0036094 | IEA | PLAZA Homology | small molecule binding | HOM03M000068 |
| GO:0097159 | IEA | PLAZA Homology | organic cyclic compound binding | HOM03M000068 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | 1 |
| GO:0005634 | IDA | Gene Ontology | nucleus | 1 |
| GO:0005829 | IDA | Gene Ontology | cytosol | 1 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| Mapman id | Description |
|---|---|
| 27.4 | RNA.RNA binding |
No SignalP domains detected for this gene.