PLAZA 3.0 Monocots gene overview : AT3G54890

Gene: AT3G54890 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G54890
Transcript Identifier: AT3G54890.1
Gene Type: Coding gene
Location: 3 : 20339706-20340922 : negative

Family

Gene family: HOM03M000124
(379 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: photosystem I light harvesting complex gene 1

Curated Summary: Encodes a component of the light harvesting complex associated with photosystem I.

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Identifiers

Identifier	Name
alias	LHCA1
alias	photosystem I light harvesting complex gene 1
uniprot	Q01667

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0015979	ISS	Gene Ontology	photosynthesis	1
GO:0009768	IMP	UniProt	photosynthesis, light harvesting in photosystem I	1 2 3 4 5 6
GO:0009637	IEP, RCA,	UniProt	response to blue light	1 2 3 4 5 6 7
GO:0010114	IEP, RCA,	UniProt	response to red light	1 2 3 4 5 6 7
GO:0010218	IEP, RCA,	UniProt	response to far red light	1 2 3 4 5 6 7
GO:0006364	RCA	Gene Ontology	rRNA processing	1
GO:0009644	RCA	Gene Ontology	response to high light intensity	1
GO:0009744	RCA	Gene Ontology	response to sucrose	1
GO:0010155	RCA	Gene Ontology	regulation of proton transport	1
GO:0018298	IEA	UniProt	protein-chromophore linkage	1 2 3 4 5
GO:0009765	IEA	InterPro	photosynthesis, light harvesting
GO:0006091	IEA	PLAZA Homology	generation of precursor metabolites and energy	HOM03M000124
GO:0019684	IEA	PLAZA Homology	photosynthesis, light reaction	HOM03M000124

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016168	IEA, ISS	UniProt	chlorophyll binding	1 2 3 4 5 6
GO:0046872	IEA	UniProt	metal ion binding	1 2 3 4 5

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IDA, ISM	Gene Ontology	chloroplast	1 2
GO:0030076	ISS	Gene Ontology	light-harvesting complex	1
GO:0009941	IDA	UniProt	chloroplast envelope	1 2 3 4 5 6
GO:0009535	IDA	UniProt	chloroplast thylakoid membrane	1 2 3 4 5 6
GO:0010287	IDA	UniProt	plastoglobule	1 2 3 4 5 6
GO:0016020	IDA, IEA	Gene Ontology	membrane	1
GO:0009579	IDA	Gene Ontology	thylakoid	1
GO:0009534	IDA	Gene Ontology	chloroplast thylakoid	1
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4 5
GO:0009522	IEA	UniProt	photosystem I	1 2 3 4 5
GO:0009523	IEA	UniProt	photosystem II	1 2 3 4 5

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR023329	Chlorophyll a/b binding protein domain
IPR001344	Chlorophyll A-B binding protein, plant
IPR022796	Chlorophyll A-B binding protein

Mapman id	Description
1.1.2.1	PS.lightreaction.photosystem I.LHC-I

No SignalP domains detected for this gene.