Gene: AT3G49500 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G49500
Transcript Identifier
AT3G49500.1
Gene Type
Coding gene
Location
3 : 18349193-18353205 : negative

Family

Gene family
HOM03M001053
(69 genes in 14 species)
specific family

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Descriptions

Description
RNA-dependent RNA polymerase 6
Curated Summary
Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.
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Identifiers

Identifier Name
aliasSILENCING DEFECTIVE 1
aliasRNA-dependent RNA polymerase 6
aliasSDE1
aliasSUPPRESSOR OF GENE SILENCING 2
aliasSGS2
aliasRDR6
uniprotQ9SG02

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016246IMPGene OntologyRNA interference1
GO:0016441TASGene Ontologyposttranscriptional gene silencing1
GO:0030422TASGene Ontologyproduction of siRNA involved in RNA interference1
GO:0048366IGIUniProtleaf development1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0010267IMPUniProtproduction of ta-siRNAs involved in RNA interference1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0051607IMPGene Ontologydefense response to virus1
GO:0035196IMPGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0009616IMPUniProtvirus induced gene silencing1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0031047IMPGene Ontologygene silencing by RNA1
GO:0048440IGIUniProtcarpel development1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0048467IMPGene Ontologygynoecium development1
GO:0048544IMPUniProtrecognition of pollen1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676ISSGene Ontologynucleic acid binding1
GO:0003968ISS, IEA, UniProtRNA-directed RNA polymerase activity1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0003887IEAUniProtDNA-directed DNA polymerase activity1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0003723IEAUniProtRNA binding1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007855RNA-dependent RNA polymerase, eukaryotic-type

Mapman id Description
27.2RNA.transcription
No SignalP domains detected for this gene.