Gene: AT3G48100 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT3G48100
- Transcript Identifier
- AT3G48100.1
- Gene Type
- Coding gene
- Location
- 3 : 17759112-17760740 : negative
Family
- Gene family
- Subfamily
- Duplication type
- Block duplicate
Descriptions
- Description
-
response regulator 5
- Curated Summary
-
Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.
Identifiers
Identifier | Name |
---|---|
alias | ARR5 |
alias | INDUCED BY CYTOKININ 6 |
alias | RR5 |
alias | response regulator 5 |
alias | IBC6 |
alias | ARABIDOPSIS THALIANA RESPONSE REGULATOR 2 |
alias | ATRR2 |
uniprot | Q9SB04 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0009735 | IEP | Gene Ontology | response to cytokinin | 1 |
GO:0006355 | TAS, IEA, | UniProt | regulation of transcription, DNA-dependent | 1 2 3 4 5 6 7 8 9 |
GO:0009736 | IMP, RCATAS, | UniProt | cytokinin-activated signaling pathway | 1 2 3 4 5 6 7 8 9 10 11 |
GO:0010114 | IMP | UniProt | response to red light | 1 2 3 4 5 6 7 8 9 |
GO:0007623 | IMP, RCA, | UniProt | circadian rhythm | 1 2 3 4 5 6 7 8 9 10 |
GO:0006612 | RCA | Gene Ontology | protein targeting to membrane | 1 |
GO:0009963 | RCA | Gene Ontology | positive regulation of flavonoid biosynthetic process | 1 |
GO:0010363 | RCA | Gene Ontology | regulation of plant-type hypersensitive response | 1 |
GO:0006351 | IEA | UniProt | transcription, DNA-templated | 1 2 3 4 5 6 7 8 |
GO:0000160 | IEA | InterPro | phosphorelay signal transduction system | |
GO:2001141 | IEA | PLAZA Homology | regulation of RNA biosynthetic process | HOM03M000363 |
Molecular Function
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0000156 | IMP, ISSIEA, | UniProt | phosphorelay response regulator activity | 1 2 3 4 5 6 7 8 9 10 |
GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
GO:0060089 | IEA | PLAZA Homology | molecular transducer activity | HOM03M000363 |
GO:0004871 | IEA | PLAZA Homology | signal transducer activity | HOM03M000363 |
Cellular Component
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0005634 | IDA, ISM, | UniProt | nucleus | 1 2 3 4 5 6 7 8 9 10 |
GO:0005737 | IDA | UniProt | cytoplasm | 1 2 3 4 5 6 7 8 9 |
Color Legend
Experimental Evidence |
Electronic Evidence |
Computational Reviewed Evidence |
Mapman id | Description |
---|---|
27.3.5 | RNA.regulation of transcription.ARR |
No SignalP domains detected for this gene.
Database | Type |
---|---|
PlnTFDB | Orphans |