PLAZA 3.0 Monocots gene overview : AT3G48100

Gene: AT3G48100 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G48100
Transcript Identifier: AT3G48100.1
Gene Type: Coding gene
Location: 3 : 17759112-17760740 : negative

Family

Gene family: HOM03M000363
(165 genes in 14 species)
specific family
Subfamily: ORTHO03M005786
(6 genes in 5 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: response regulator 5

Curated Summary: Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.

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Identifiers

Identifier	Name
alias	ARR5
alias	INDUCED BY CYTOKININ 6
alias	RR5
alias	response regulator 5
alias	IBC6
alias	ARABIDOPSIS THALIANA RESPONSE REGULATOR 2
alias	ATRR2
uniprot	Q9SB04

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009735	IEP	Gene Ontology	response to cytokinin	1
GO:0006355	TAS, IEA,	UniProt	regulation of transcription, DNA-dependent	1 2 3 4 5 6 7 8 9
GO:0009736	IMP, RCATAS,	UniProt	cytokinin-activated signaling pathway	1 2 3 4 5 6 7 8 9 10 11
GO:0010114	IMP	UniProt	response to red light	1 2 3 4 5 6 7 8 9
GO:0007623	IMP, RCA,	UniProt	circadian rhythm	1 2 3 4 5 6 7 8 9 10
GO:0006612	RCA	Gene Ontology	protein targeting to membrane	1
GO:0009963	RCA	Gene Ontology	positive regulation of flavonoid biosynthetic process	1
GO:0010363	RCA	Gene Ontology	regulation of plant-type hypersensitive response	1
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3 4 5 6 7 8
GO:0000160	IEA	InterPro	phosphorelay signal transduction system
GO:2001141	IEA	PLAZA Homology	regulation of RNA biosynthetic process	HOM03M000363

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000156	IMP, ISSIEA,	UniProt	phosphorelay response regulator activity	1 2 3 4 5 6 7 8 9 10
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0060089	IEA	PLAZA Homology	molecular transducer activity	HOM03M000363
GO:0004871	IEA	PLAZA Homology	signal transducer activity	HOM03M000363

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM,	UniProt	nucleus	1 2 3 4 5 6 7 8 9 10
GO:0005737	IDA	UniProt	cytoplasm	1 2 3 4 5 6 7 8 9

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001789	Signal transduction response regulator, receiver domain
IPR011006	CheY-like superfamily

Mapman id	Description
27.3.5	RNA.regulation of transcription.ARR

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	Orphans