PLAZA 3.0 Monocots gene overview : AT3G29160

Gene: AT3G29160 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G29160
Transcript Identifier: AT3G29160.1
Gene Type: Coding gene
Location: 3 : 11128893-11131510 : negative

Family

Gene family: HOM03M000021
(1515 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: SNF1 kinase homolog 11

Curated Summary: encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1.

Identifiers

Identifier	Name
alias	SNF1-RELATED PROTEIN KINASE 1.2
alias	AKIN11
alias	SNF1 kinase homolog 11
alias	SNRK1.2
alias	KIN11
alias	ATKIN11
uniprot	P92958

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006468	IDA, IEA	Gene Ontology	protein phosphorylation	1
GO:0046777	IDA	UniProt	protein autophosphorylation	1 2 3 4 5 6 7 8 9 10 11 12
GO:0005975	IEA	UniProt	carbohydrate metabolic process	1 2 3 4 5 6 7 8 9 10 11
GO:0006633	IEA	UniProt	fatty acid biosynthetic process	1 2 3 4 5 6 7 8 9 10 11
GO:0019048	IEA	UniProt	modulation by virus of host morphology or physiology	1 2 3 4 5 6 7 8 9 10 11
GO:0042128	IEA	UniProt	nitrate assimilation	1 2 3 4 5 6 7 8 9 10 11
GO:0050688	IEA	UniProt	regulation of defense response to virus	1 2 3 4 5 6 7 8 9 10 11
GO:0044260	IEA	PLAZA Homology	cellular macromolecule metabolic process	HOM03M000021
GO:0006796	IEA	PLAZA Homology	phosphate-containing compound metabolic process	HOM03M000021
GO:0006793	IEA	PLAZA Homology	phosphorus metabolic process	HOM03M000021
GO:0043170	IEA	PLAZA Homology	macromolecule metabolic process	HOM03M000021
GO:0044237	IEA	PLAZA Homology	cellular metabolic process	HOM03M000021
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03M000021
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03M000021
GO:0016310	IEA	PLAZA Homology	phosphorylation	HOM03M000021
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000021
GO:0043412	IEA	PLAZA Homology	macromolecule modification	HOM03M000021
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03M000021
GO:0044267	IEA	PLAZA Homology	cellular protein metabolic process	HOM03M000021
GO:0006464	IEA	PLAZA Homology	cellular protein modification process	HOM03M000021
GO:0036211	IEA	PLAZA Homology	protein modification process	HOM03M000021
GO:0019538	IEA	PLAZA Homology	protein metabolic process	HOM03M000021

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004672	IDA, ISSIEA,	UniProt	protein kinase activity	1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0005515	IPI, IEA	Gene Ontology	protein binding	1
GO:0005524	IEA	UniProt	ATP binding	1 2 3 4 5 6 7 8 9 10 11
GO:0004674	IEA	UniProt	protein serine/threonine kinase activity	1 2 3 4 5 6 7 8 9 10 11
GO:0016772	IEA	InterPro	transferase activity, transferring phosphorus-containing groups
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03M000021
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03M000021
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03M000021
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000021
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03M000021
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03M000021
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000021
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03M000021
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000021
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03M000021
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03M000021
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03M000021
GO:0016301	IEA	PLAZA Homology	kinase activity	HOM03M000021
GO:0016773	IEA	PLAZA Homology	phosphotransferase activity, alcohol group as acceptor	HOM03M000021
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000021
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03M000021
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000021
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03M000021
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000021
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000021
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03M000021
GO:0016740	IEA	PLAZA Homology	transferase activity	HOM03M000021
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03M000021

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0005737	ISM	Gene Ontology	cytoplasm	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR017441	Protein kinase, ATP binding site
IPR001772	Kinase associated domain 1 (KA1)
IPR011009	Protein kinase-like domain
IPR000449	Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal
IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain
IPR028375	KA1 domain/Ssp2 C-terminal domain
IPR009060	UBA-like
IPR015940	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
IPR008271	Serine/threonine-protein kinase, active site

Mapman id	Description
30.1	signalling.in sugar and nutrient physiology

No SignalP domains detected for this gene.