PLAZA 3.0 Monocots gene overview : AT3G20810

Gene: AT3G20810 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G20810
Transcript Identifier: AT3G20810.2
Gene Type: Coding gene
Location: 3 : 7275814-7278144 : positive

Family

Gene family: HOM03M003001
(28 genes in 16 species)
specific family

Loading...please wait

Descriptions

Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Curated Summary: JMJD5 encodes a protein which contains a jumonji-C (jmjC) domain. The jumonji-C is frequently found in proteins with histone demethylase activity. jmjd5 mutant plants have a short-period circadian phenotype.

Show more...

Identifiers

Identifier	Name
alias	JMJ30
alias	Jumonji C domain-containing protein 30
alias	jumonji domain containing 5
alias	JMJD5

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007623	IMP	Gene Ontology	circadian rhythm	1
GO:0042752	IMP	Gene Ontology	regulation of circadian rhythm	1
GO:0006355	RCA	Gene Ontology	regulation of transcription, DNA-dependent	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	ISS	Gene Ontology	sequence-specific DNA binding transcription factor activity	1
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003347	JmjC domain

Mapman id	Description
27.3.57	RNA.regulation of transcription.JUMONJI family

No SignalP domains detected for this gene.