PLAZA 3.0 Monocots gene overview : AT3G19760

Gene: AT3G19760 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G19760
Transcript Identifier: AT3G19760.1
Gene Type: Coding gene
Location: 3 : 6863790-6866242 : positive

Family

Gene family: HOM03M000037
(943 genes in 16 species)
specific family

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Descriptions

Description: eukaryotic initiation factor 4A-III

Curated Summary: Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles.

Identifiers

Identifier	Name
alias	eukaryotic initiation factor 4A-III
alias	EIF4A-III
uniprot	Q94A52

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0001666	IDA	UniProt	response to hypoxia	1 2 3 4 5
GO:0006397	IPI	UniProt	mRNA processing	1 2 3 4 5
GO:0006364	IEA	UniProt	rRNA processing	1 2 3 4

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008026	IEA, ISS	UniProt	ATP-dependent helicase activity	1 2 3 4 5
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0005524	IEA	UniProt	ATP binding	1 2 3 4
GO:0003723	IEA	UniProt	RNA binding	1 2 3 4
GO:0004386	IEA	InterPro	helicase activity
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03M000037
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03M000037
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03M000037
GO:0042623	IEA	PLAZA Homology	ATPase activity, coupled	HOM03M000037
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03M000037
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000037
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03M000037
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03M000037
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000037
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03M000037
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03M000037
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000037
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03M000037
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03M000037
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03M000037
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03M000037
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000037
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03M000037
GO:0016887	IEA	PLAZA Homology	ATPase activity	HOM03M000037
GO:0017111	IEA	PLAZA Homology	nucleoside-triphosphatase activity	HOM03M000037
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000037
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03M000037
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03M000037
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000037
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000037
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03M000037
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03M000037
GO:0070035	IEA	PLAZA Homology	purine NTP-dependent helicase activity	HOM03M000037

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM	Gene Ontology	nucleus	1 2
GO:0005730	IDA	UniProt	nucleolus	1 2 3 4 5
GO:0016020	IDA	UniProt	membrane	1 2 3 4 5
GO:0005654	IDA	Gene Ontology	nucleoplasm	1
GO:0016607	IDA	UniProt	nuclear speck	1 2 3 4 5
GO:0035145	IDA	UniProt	exon-exon junction complex	1 2 3 4 5

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
IPR011545	DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR001650	Helicase, C-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
29.2.2.3.5	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.DExD-box helicases

No SignalP domains detected for this gene.