Gene: AT3G19140 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT3G19140
- Transcript Identifier
- AT3G19140.1
- Gene Type
- Coding gene
- Location
- 3 : 6614910-6615335 : negative
Family
- Gene family
- Duplication type
- Tandem duplicate and Block duplicate
Descriptions
- Description
-
RING/U-box superfamily protein
- Curated Summary
-
DAY NEUTRAL FLOWERING (DNF) is a membrane-bound E3 ligase involved in the regulation of flowering time in Arabidopsis. It negetively regulate the early flowering under Short Day condition.
Identifiers
Identifier | Name |
---|---|
alias | DAY NEUTRAL FLOWERING |
alias | DNF |
uniprot | Q9LJL6 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
- ...sequences.
- ...the multiple sequence alignment of the gene family with BioJS
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBIs protein database.
- ...the gene in Genomeview, a genome browser
- ...all colinear gene pairs.
Biological Process
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0048577 | IMP | UniProt | negative regulation of short-day photoperiodism, flowering | 1 2 3 4 5 |
Molecular Function
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0004842 | IDA | UniProt | ubiquitin-protein ligase activity | 1 2 3 4 5 |
GO:0008270 | IEA | UniProt | zinc ion binding | 1 2 3 4 |
GO:0005515 | IEA | InterPro | protein binding | |
GO:0043169 | IEA | PLAZA Homology | cation binding | HOM03M000020 |
GO:0005488 | IEA | PLAZA Homology | binding | HOM03M000020 |
GO:0043167 | IEA | PLAZA Homology | ion binding | HOM03M000020 |
GO:0046914 | IEA | PLAZA Homology | transition metal ion binding | HOM03M000020 |
GO:0046872 | IEA | PLAZA Homology | metal ion binding | HOM03M000020 |
Cellular Component
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0005576 | ISM | Gene Ontology | extracellular region | 1 |
GO:0005886 | IDA | UniProt | plasma membrane | 1 2 3 4 5 |
GO:0016021 | IEA | UniProt | integral to membrane | 1 2 3 4 |
Color Legend
Experimental Evidence |
Electronic Evidence |
Computational Reviewed Evidence |
Mapman id | Description |
---|---|
27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family |
No SignalP domains detected for this gene.