Gene: AT3G16850 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G16850
Transcript Identifier
AT3G16850.1
Gene Type
Coding gene
Location
3 : 5748692-5750981 : positive

Family

Gene family
HOM03M000347
(169 genes in 14 species)
specific family
Subfamily
ORTHO03M007202
(5 genes in 3 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Pectin lyase-like superfamily protein
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Identifiers

Identifier Name

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975ISS, IEAGene Ontologycarbohydrate metabolic process1
GO:0006816RCAGene Ontologycalcium ion transport1
GO:0007030RCAGene OntologyGolgi organization1
GO:0009637RCAGene Ontologyresponse to blue light1
GO:0009651RCAGene Ontologyresponse to salt stress1
GO:0010155RCAGene Ontologyregulation of proton transport1
GO:0046777RCAGene Ontologyprotein autophosphorylation1
GO:0048767RCAGene Ontologyroot hair elongation1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650ISS, IEAGene Ontologypolygalacturonase activity1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576ISMGene Ontologyextracellular region1
GO:0005773IDAGene Ontologyvacuole1
GO:0009505IDAGene Ontologyplant-type cell wall1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000743Glycoside hydrolase, family 28
IPR006626Parallel beta-helix repeat
IPR011050Pectin lyase fold/virulence factor
IPR012334Pectin lyase fold

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network