PLAZA 3.0 Monocots gene overview : AT3G13610

Gene: AT3G13610 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G13610
Transcript Identifier: AT3G13610.1
Gene Type: Coding gene
Location: 3 : 4449448-4450616 : positive

Family

Gene family: HOM03M000022
(1435 genes in 16 species)
specific family
Subfamily: ORTHO03M024188
(2 genes in 2 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

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Identifiers

Identifier	Name
alias	F6'H1
uniprot	Q9LHN8

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0019748	ISS	Gene Ontology	secondary metabolic process	1
GO:0010421	IMP	UniProt	hydrogen peroxide-mediated programmed cell death	1 2 3
GO:0009805	IMP, RCA,	UniProt	coumarin biosynthetic process	1 2 3 4
GO:0009407	RCA	Gene Ontology	toxin catabolic process	1
GO:0009611	RCA	Gene Ontology	response to wounding	1
GO:0010583	RCA	Gene Ontology	response to cyclopentenone	1
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03M000022
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03M000022
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000022

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016706	IEA, ISS	UniProt	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1 2 3
GO:0051213	IDA	UniProt	dioxygenase activity	1 2 3
GO:0046872	IEA	UniProt	metal ion binding	1 2
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0016705	IEA	PLAZA Homology	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	HOM03M000022
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000022

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR026992	Non-haem dioxygenase N-terminal domain
IPR005123	Oxoglutarate/iron-dependent dioxygenase
IPR027443	Isopenicillin N synthase-like

Mapman id	Description
28.99	DNA.unspecified

No SignalP domains detected for this gene.