Gene: AT3G13550 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G13550
Transcript Identifier
AT3G13550.1
Gene Type
Coding gene
Location
3 : 4423569-4424797 : negative

Family

Gene family
HOM03M000077
(598 genes in 16 species)
specific family
Subfamily
ORTHO03M001698
(10 genes in 10 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Ubiquitin-conjugating enzyme family protein
Curated Summary
Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark.
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Identifiers

Identifier Name
aliasEMB144
aliasCOP10
aliasCIN4
aliasCONSTITUTIVE PHOTOMORPHOGENIC 10
aliasEMBRYO DEFECTIVE 144
aliasFUS9
aliasCYTOKININ-INSENSITIVE 4
aliasFUSCA 9
uniprotQ9LJD7

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009640RCAGene Ontologyphotomorphogenesis1
GO:0010388RCAGene Ontologycullin deneddylation1
GO:0042023RCAGene OntologyDNA endoreduplication1
GO:0043161RCAGene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process1
GO:0043248RCAGene Ontologyproteasome assembly1
GO:0051510RCAGene Ontologyregulation of unidimensional cell growth1
GO:0051788RCAGene Ontologyresponse to misfolded protein1
GO:0010099IMPUniProtregulation of photomorphogenesis1 2 3 4
GO:0009585IEAUniProtred, far-red light phototransduction1 2 3

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004842ISSUniProtubiquitin-protein ligase activity1 2 3 4
GO:0005515IPIGene Ontologyprotein binding1
GO:0016881IEAInterProacid-amino acid ligase activity
GO:0016874IEAPLAZA Homologyligase activityHOM03M000077
GO:0016879IEAPLAZA Homologyligase activity, forming carbon-nitrogen bondsHOM03M000077
GO:0003824IEAPLAZA Homologycatalytic activityHOM03M000077

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000608Ubiquitin-conjugating enzyme, E2
IPR016135Ubiquitin-conjugating enzyme/RWD-like

Mapman id Description
29.5.11.3protein.degradation.ubiquitin.E2
No SignalP domains detected for this gene.