Gene: AT3G12160 (Arabidopsis thaliana)

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Gene Identifier
AT3G12160
Transcript Identifier
AT3G12160.1
Gene Type
Coding gene
Location
3 : 3879495-3880437 : negative

Family

Gene family
HOM03M000036
(959 genes in 16 species)
specific family
Subfamily
ORTHO03M010611
(4 genes in 3 species)
specific family

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Descriptions

Description
RAB GTPase homolog A4D
Curated Summary
Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity.
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Identifiers

Identifier Name
aliasRAB GTPase homolog A4D
aliasATRABA4D
aliasRABA4D
aliasARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D
uniprotQ9LH50

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009860IDA, RCA, UniProtpollen tube growth1 2 3 4 5 6
GO:0048868IGI, RCAGene Ontologypollen tube development1 2
GO:0080092IMPUniProtregulation of pollen tube growth1 2 3 4 5
GO:0009827RCAGene Ontologyplant-type cell wall modification1
GO:0016192RCAGene Ontologyvesicle-mediated transport1
GO:0048610RCAGene Ontologycellular process involved in reproduction1
GO:0015031IEAUniProtprotein transport1 2 3 4
GO:0007264IEAUniProtsmall GTPase mediated signal transduction1 2 3 4
GO:0006184IEAInterProGTP catabolic process
GO:0007165IEAInterProsignal transduction
GO:0006886IEAInterProintracellular protein transport
GO:0006913IEAInterPronucleocytoplasmic transport
GO:0009203IEAPLAZA Homologyribonucleoside triphosphate catabolic processHOM03M000036
GO:0009205IEAPLAZA Homologypurine ribonucleoside triphosphate metabolic processHOM03M000036
GO:0009207IEAPLAZA Homologypurine ribonucleoside triphosphate catabolic processHOM03M000036
GO:0046128IEAPLAZA Homologypurine ribonucleoside metabolic processHOM03M000036
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03M000036
GO:0006753IEAPLAZA Homologynucleoside phosphate metabolic processHOM03M000036
GO:0046130IEAPLAZA Homologypurine ribonucleoside catabolic processHOM03M000036
GO:0006152IEAPLAZA Homologypurine nucleoside catabolic processHOM03M000036
GO:0042454IEAPLAZA Homologyribonucleoside catabolic processHOM03M000036
GO:0051169IEAPLAZA Homologynuclear transportHOM03M000036
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03M000036
GO:0033036IEAPLAZA Homologymacromolecule localizationHOM03M000036
GO:0019439IEAPLAZA Homologyaromatic compound catabolic processHOM03M000036
GO:0046700IEAPLAZA Homologyheterocycle catabolic processHOM03M000036
GO:0009987IEAPLAZA Homologycellular processHOM03M000036
GO:0023052IEAPLAZA HomologysignalingHOM03M000036
GO:1901292IEAPLAZA Homologynucleoside phosphate catabolic processHOM03M000036
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03M000036
GO:0019637IEAPLAZA Homologyorganophosphate metabolic processHOM03M000036
GO:0051179IEAPLAZA HomologylocalizationHOM03M000036
GO:1901575IEAPLAZA Homologyorganic substance catabolic processHOM03M000036
GO:0019693IEAPLAZA Homologyribose phosphate metabolic processHOM03M000036
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03M000036
GO:1901069IEAPLAZA Homologyguanosine-containing compound catabolic processHOM03M000036
GO:1901068IEAPLAZA Homologyguanosine-containing compound metabolic processHOM03M000036
GO:0044281IEAPLAZA Homologysmall molecule metabolic processHOM03M000036
GO:0051234IEAPLAZA Homologyestablishment of localizationHOM03M000036
GO:0009261IEAPLAZA Homologyribonucleotide catabolic processHOM03M000036
GO:0042278IEAPLAZA Homologypurine nucleoside metabolic processHOM03M000036
GO:1901565IEAPLAZA Homologyorganonitrogen compound catabolic processHOM03M000036
GO:1901564IEAPLAZA Homologyorganonitrogen compound metabolic processHOM03M000036
GO:0070727IEAPLAZA Homologycellular macromolecule localizationHOM03M000036
GO:0009199IEAPLAZA Homologyribonucleoside triphosphate metabolic processHOM03M000036
GO:0009056IEAPLAZA Homologycatabolic processHOM03M000036
GO:0055086IEAPLAZA Homologynucleobase-containing small molecule metabolic processHOM03M000036
GO:0046907IEAPLAZA Homologyintracellular transportHOM03M000036
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03M000036
GO:1901361IEAPLAZA Homologyorganic cyclic compound catabolic processHOM03M000036
GO:0034655IEAPLAZA Homologynucleobase-containing compound catabolic processHOM03M000036
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03M000036
GO:0072521IEAPLAZA Homologypurine-containing compound metabolic processHOM03M000036
GO:0008152IEAPLAZA Homologymetabolic processHOM03M000036
GO:0072523IEAPLAZA Homologypurine-containing compound catabolic processHOM03M000036
GO:0009116IEAPLAZA Homologynucleoside metabolic processHOM03M000036
GO:0044700IEAPLAZA Homologysingle organism signalingHOM03M000036
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03M000036
GO:0009119IEAPLAZA Homologyribonucleoside metabolic processHOM03M000036
GO:0071702IEAPLAZA Homologyorganic substance transportHOM03M000036
GO:0009259IEAPLAZA Homologyribonucleotide metabolic processHOM03M000036
GO:0006163IEAPLAZA Homologypurine nucleotide metabolic processHOM03M000036
GO:0009117IEAPLAZA Homologynucleotide metabolic processHOM03M000036
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03M000036
GO:0051716IEAPLAZA Homologycellular response to stimulusHOM03M000036
GO:0009146IEAPLAZA Homologypurine nucleoside triphosphate catabolic processHOM03M000036
GO:0009144IEAPLAZA Homologypurine nucleoside triphosphate metabolic processHOM03M000036
GO:0009143IEAPLAZA Homologynucleoside triphosphate catabolic processHOM03M000036
GO:0006796IEAPLAZA Homologyphosphate-containing compound metabolic processHOM03M000036
GO:0009141IEAPLAZA Homologynucleoside triphosphate metabolic processHOM03M000036
GO:0046434IEAPLAZA Homologyorganophosphate catabolic processHOM03M000036
GO:0006793IEAPLAZA Homologyphosphorus metabolic processHOM03M000036
GO:0051641IEAPLAZA Homologycellular localizationHOM03M000036
GO:0006195IEAPLAZA Homologypurine nucleotide catabolic processHOM03M000036
GO:0044710IEAPLAZA Homologysingle-organism metabolic processHOM03M000036
GO:0044712IEAPLAZA Homologysingle-organism catabolic processHOM03M000036
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03M000036
GO:0016482IEAPLAZA Homologycytoplasmic transportHOM03M000036
GO:0006810IEAPLAZA HomologytransportHOM03M000036
GO:0051649IEAPLAZA Homologyestablishment of localization in cellHOM03M000036
GO:0044270IEAPLAZA Homologycellular nitrogen compound catabolic processHOM03M000036
GO:0065007IEAPLAZA Homologybiological regulationHOM03M000036
GO:1901657IEAPLAZA Homologyglycosyl compound metabolic processHOM03M000036
GO:1901658IEAPLAZA Homologyglycosyl compound catabolic processHOM03M000036
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03M000036
GO:0009166IEAPLAZA Homologynucleotide catabolic processHOM03M000036
GO:0045184IEAPLAZA Homologyestablishment of protein localizationHOM03M000036
GO:0009164IEAPLAZA Homologynucleoside catabolic processHOM03M000036
GO:0035556IEAPLAZA Homologyintracellular signal transductionHOM03M000036
GO:0008104IEAPLAZA Homologyprotein localizationHOM03M000036
GO:0007154IEAPLAZA Homologycell communicationHOM03M000036
GO:0046039IEAPLAZA HomologyGTP metabolic processHOM03M000036
GO:0044237IEAPLAZA Homologycellular metabolic processHOM03M000036
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03M000036
GO:0044699IEAPLAZA Homologysingle-organism processHOM03M000036
GO:0009150IEAPLAZA Homologypurine ribonucleotide metabolic processHOM03M000036
GO:1901136IEAPLAZA Homologycarbohydrate derivative catabolic processHOM03M000036
GO:1901135IEAPLAZA Homologycarbohydrate derivative metabolic processHOM03M000036
GO:0009154IEAPLAZA Homologypurine ribonucleotide catabolic processHOM03M000036
GO:0034613IEAPLAZA Homologycellular protein localizationHOM03M000036
GO:0044248IEAPLAZA Homologycellular catabolic processHOM03M000036
GO:0050896IEAPLAZA Homologyresponse to stimulusHOM03M000036

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005525IEA, ISSUniProtGTP binding1 2 3 4 5
GO:0019900IPIGene Ontologykinase binding1
GO:0003924IEAInterProGTPase activity
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03M000036
GO:0043168IEAPLAZA Homologyanion bindingHOM03M000036
GO:0043167IEAPLAZA Homologyion bindingHOM03M000036
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03M000036
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03M000036
GO:0000166IEAPLAZA Homologynucleotide bindingHOM03M000036
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03M000036
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03M000036
GO:0003824IEAPLAZA Homologycatalytic activityHOM03M000036
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M000036
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03M000036
GO:0019001IEAPLAZA Homologyguanyl nucleotide bindingHOM03M000036
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03M000036
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03M000036
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03M000036
GO:0032561IEAPLAZA Homologyguanyl ribonucleotide bindingHOM03M000036
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03M000036
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03M000036
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03M000036
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03M000036
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03M000036
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03M000036
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000036
GO:0005488IEAPLAZA HomologybindingHOM03M000036
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03M000036

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005794ISMGene OntologyGolgi apparatus1
GO:0045177IDAUniProtapical part of cell1 2 3 4 5
GO:0070382IDAUniProtexocytic vesicle1 2 3 4 5
GO:0090404IDAUniProtpollen tube tip1 2 3 4 5
GO:0030659IEAUniProtcytoplasmic vesicle membrane1 2 3 4
GO:0005622IEAInterProintracellular
GO:0016020IEAInterPromembrane
GO:0005623IEAPLAZA HomologycellHOM03M000036
GO:0044464IEAPLAZA Homologycell partHOM03M000036

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001806Small GTPase superfamily
IPR002041Ran GTPase
IPR024156Small GTPase superfamily, ARF type
IPR005225Small GTP-binding protein domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR003578Small GTPase superfamily, Rho type
IPR020849Small GTPase superfamily, Ras type
IPR003579Small GTPase superfamily, Rab type

Mapman id Description
30.5signalling.G-proteins
No SignalP domains detected for this gene.