PLAZA 3.0 Monocots gene overview : AT3G11460

Gene: AT3G11460 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G11460
Transcript Identifier: AT3G11460.1
Gene Type: Coding gene
Location: 3 : 3608250-3610121 : positive

Family

Gene family: HOM03M000001
(3285 genes in 14 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: Pentatricopeptide repeat (PPR) superfamily protein

Curated Summary: Encodes a DYW PPR protein that is involved in editing the mitochondrial NAD2 transcript at the site nad2-842.

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Identifiers

Identifier	Name
alias	mitochondrial RNA editing factor 10
alias	MEF10
uniprot	Q9CAY1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016554	IMP	UniProt	cytidine to uridine editing	1 2 3

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000001

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	ISM	Gene Ontology	mitochondrion	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR011990	Tetratricopeptide-like helical

Mapman id	Description
35.1.5	not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein

No SignalP domains detected for this gene.