PLAZA 3.0 Monocots gene overview : AT3G09840

Gene: AT3G09840 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G09840
Transcript Identifier: AT3G09840.1
Gene Type: Coding gene
Location: 3 : 3019494-3022832 : positive

Family

Gene family: HOM03M000030
(1059 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: cell division cycle 48

Curated Summary: Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.

Identifiers

Identifier	Name
alias	ATCDC48
alias	cell division cycle 48
alias	CDC48
alias	CDC48A
uniprot	P54609

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0046686	IEP, RCA,	UniProt	response to cadmium ion	1 2 3 4 5 6 7 8 9 10
GO:0009846	IMP	UniProt	pollen germination	1 2 3 4 5 6 7 8 9
GO:0009860	IMP	UniProt	pollen tube growth	1 2 3 4 5 6 7 8 9
GO:0051301	IMP	UniProt	cell division	1 2 3 4 5 6 7 8 9
GO:0006486	RCA	Gene Ontology	protein glycosylation	1
GO:0016310	RCA	Gene Ontology	phosphorylation	1
GO:0042742	RCA	Gene Ontology	defense response to bacterium	1
GO:0007049	IEA	UniProt	cell cycle	1 2 3 4 5 6 7 8
GO:0015031	IEA	UniProt	protein transport	1 2 3 4 5 6 7 8

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016887	ISS	Gene Ontology	ATPase activity	1
GO:0042802	IPI	Gene Ontology	identical protein binding	1
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0005524	IEA	UniProt	ATP binding	1 2 3 4 5 6 7 8
GO:0017111	IEA	UniProt	nucleoside-triphosphatase activity	1 2 3 4 5 6 7 8
GO:0016787	IEA	InterPro	hydrolase activity
GO:0000166	IEA	InterPro	nucleotide binding
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03M000030
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03M000030
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03M000030
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03M000030
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000030
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03M000030
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03M000030
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000030
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03M000030
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03M000030
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000030
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03M000030
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03M000030
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03M000030
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000030
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03M000030
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000030
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03M000030
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000030
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03M000030
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03M000030

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM	Gene Ontology	nucleus	1 2
GO:0022626	IDA	UniProt	cytosolic ribosome	1 2 3 4 5 6 7 8 9
GO:0005618	IDA	UniProt	cell wall	1 2 3 4 5 6 7 8 9
GO:0005886	IDA	UniProt	plasma membrane	1 2 3 4 5 6 7 8 9
GO:0005635	IDA	UniProt	nuclear envelope	1 2 3 4 5 6 7 8 9
GO:0005730	IDA	UniProt	nucleolus	1 2 3 4 5 6 7 8 9
GO:0005819	IDA	UniProt	spindle	1 2 3 4 5 6 7 8 9
GO:0009524	IDA	UniProt	phragmoplast	1 2 3 4 5 6 7 8 9
GO:0005829	IDA	Gene Ontology	cytosol	1
GO:0009506	IDA	UniProt	plasmodesma	1 2 3 4 5 6 7 8 9
GO:0048046	IDA	UniProt	apoplast	1 2 3 4 5 6 7 8 9
GO:0005794	IDA	UniProt	Golgi apparatus	1 2 3 4 5 6 7 8 9
GO:0005737	IDA	Gene Ontology	cytoplasm	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR004201	CDC48, domain 2
IPR003338	CDC48, N-terminal subdomain
IPR003960	ATPase, AAA-type, conserved site
IPR003593	AAA+ ATPase domain
IPR003959	ATPase, AAA-type, core
IPR009010	Aspartate decarboxylase-like domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR005938	AAA ATPase, CDC48 family

Mapman id	Description
31.2	cell.division

No SignalP domains detected for this gene.