Gene: AT3G07970 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G07970
Transcript Identifier
AT3G07970.1
Gene Type
Coding gene
Location
3 : 2541006-2543370 : positive

Family

Gene family
HOM03M000089
(508 genes in 14 species)
specific family
Subfamily
ORTHO03M024168
(2 genes in 2 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description
Pectin lyase-like superfamily protein
Curated Summary
Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.
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Identifiers

Identifier Name
aliasQRT2
aliasQUARTET 2
uniprotQ9SFB7

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975ISS, IEAGene Ontologycarbohydrate metabolic process1
GO:0009830TASUniProtcell wall modification involved in abscission1 2 3 4 5 6
GO:0009901IMPUniProtanther dehiscence1 2 3 4 5 6
GO:0010047IMPUniProtfruit dehiscence1 2 3 4 5 6
GO:0048235IMPUniProtpollen sperm cell differentiation1 2 3 4 5 6
GO:0045490IMPUniProtpectin catabolic process1 2 3 4 5 6
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03M000089

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650IDA, ISSIEA, UniProtpolygalacturonase activity1 2 3 4 5 6 7
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000089
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03M000089
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03M000089

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576IEA, ISMUniProtextracellular region1 2 3 4 5 6
GO:0005618IEAUniProtcell wall1 2 3 4 5

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006626Parallel beta-helix repeat
IPR011050Pectin lyase fold/virulence factor
IPR000743Glycoside hydrolase, family 28
IPR012334Pectin lyase fold

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network