Gene: AT3G04680 (Arabidopsis thaliana)

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Gene Identifier
AT3G04680
Transcript Identifier
AT3G04680.1
Gene Type
Coding gene
Location
3 : 1270053-1272415 : negative

Family

Gene family
HOM03M004452
(21 genes in 16 species)
specific family

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Descriptions

Description
CLP-similar protein 3
Curated Summary
Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.
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Identifiers

Identifier Name
aliasCLPS3
aliasCLP-similar protein 3
uniprotQ9SR06

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006397IMP, RCA, UniProtmRNA processing1 2 3 4 5 6 7
GO:0009908IMPUniProtflower development1 2 3 4 5 6
GO:0010228IMP, RCA, UniProtvegetative to reproductive phase transition of meristem1 2 3 4 5 6 7
GO:0048827IMPUniProtphyllome development1 2 3 4 5 6
GO:0000398RCAGene OntologymRNA splicing, via spliceosome1
GO:0006355RCAGene Ontologyregulation of transcription, DNA-dependent1
GO:0009640RCAGene Ontologyphotomorphogenesis1
GO:0009793RCAGene Ontologyembryo development ending in seed dormancy1
GO:0009845RCAGene Ontologyseed germination1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0009933RCAGene Ontologymeristem structural organization1
GO:0010162RCAGene Ontologyseed dormancy process1
GO:0010182RCAGene Ontologysugar mediated signaling pathway1
GO:0016567RCAGene Ontologyprotein ubiquitination1
GO:0019915RCAGene Ontologylipid storage1
GO:0030422RCAGene Ontologyproduction of siRNA involved in RNA interference1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0043687RCAGene Ontologypost-translational protein modification1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0050826RCAGene Ontologyresponse to freezing1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IPIGene Ontologyprotein binding1
GO:0005524IEAUniProtATP binding1 2 3 4 5

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2
GO:0005849IPI, ISS, UniProtmRNA cleavage factor complex1 2 3 4 5 6 7

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR010655Pre-mRNA cleavage complex II Clp1
IPR027417P-loop containing nucleoside triphosphate hydrolase

Mapman id Description
27.1.3.14RNA.processing.3 end processing.Clp1
No SignalP domains detected for this gene.