PLAZA 3.0 Monocots gene overview : AT3G03710

Gene: AT3G03710 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G03710
Transcript Identifier: AT3G03710.1
Gene Type: Coding gene
Location: 3 : 919542-924906 : positive

Family

Gene family: HOM03M002032
(40 genes in 16 species)
specific family

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Descriptions

Description: polyribonucleotide nucleotidyltransferase, putative

Curated Summary: Encodes a chloroplast polynucleotide phosphorylase (PNPase). Involved in response to phosphorus (P) starvation. Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.

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Identifiers

Identifier	Name
alias	PDE326
alias	PNP
alias	PIGMENT DEFECTIVE 326
alias	POLYNUCLEOTIDE PHOSPHORYLASE
alias	resistant to inhibition with FSM 10
alias	RIF10
uniprot	Q8GZQ3

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006401	IGI	UniProt	RNA catabolic process	1 2 3 4 5 6 7 8
GO:0031425	IGI	UniProt	chloroplast RNA processing	1 2 3 4 5 6 7 8
GO:0010323	IMP	UniProt	negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1 2 3 4 5 6 7 8
GO:0015995	IMP	UniProt	chlorophyll biosynthetic process	1 2 3 4 5 6 7 8
GO:0016120	IMP	UniProt	carotene biosynthetic process	1 2 3 4 5 6 7 8
GO:0016123	IMP	UniProt	xanthophyll biosynthetic process	1 2 3 4 5 6 7 8
GO:0016036	IMP	UniProt	cellular response to phosphate starvation	1 2 3 4 5 6 7 8
GO:0006402	IEA	UniProt	mRNA catabolic process	1 2 3 4 5 6 7
GO:0006397	IEA	UniProt	mRNA processing	1 2 3 4 5 6 7
GO:0006364	IEA	UniProt	rRNA processing	1 2 3 4 5 6 7
GO:0008033	IEA	UniProt	tRNA processing	1 2 3 4 5 6 7
GO:0006396	IEA	InterPro	RNA processing

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000175	IGI, ISSIEA,	UniProt	3'-5'-exoribonuclease activity	1 2 3 4 5 6 7 8 9
GO:0003676	ISS	Gene Ontology	nucleic acid binding	1
GO:0003723	IEA, ISS	UniProt	RNA binding	1 2 3 4 5 6 7 8
GO:0004654	IGI, IEA,	UniProt	polyribonucleotide nucleotidyltransferase activity	1 2 3 4 5 6 7 8

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IDA	Gene Ontology	chloroplast	1
GO:0009570	IDA	UniProt	chloroplast stroma	1 2 3 4 5 6 7 8

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR015848	Polyribonucleotide nucleotidyltransferase, RNA-binding domain
IPR027408	PNPase/RNase PH domain
IPR012340	Nucleic acid-binding, OB-fold
IPR020568	Ribosomal protein S5 domain 2-type fold
IPR001247	Exoribonuclease, phosphorolytic domain 1
IPR015847	Exoribonuclease, phosphorolytic domain 2
IPR012162	Polyribonucleotide nucleotidyltransferase
IPR022967	RNA-binding domain, S1
IPR004087	K Homology domain
IPR004088	K Homology domain, type 1
IPR003029	Ribosomal protein S1, RNA-binding domain

Mapman id	Description
27.1	RNA.processing

No SignalP domains detected for this gene.