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WorkbenchGene: AT2G46830 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT2G46830
- Transcript Identifier
- AT2G46830.1
- Gene Type
- Coding gene
- Location
- 2 : 19246005-19248717 : positive
Family
- Gene family
- Duplication type
- Block duplicate
Descriptions
- Description
-
circadian clock associated 1
- Curated Summary
-
Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Identifiers
| Identifier | Name |
|---|---|
| alias | circadian clock associated 1 |
| alias | CCA1 |
| alias | AtCCA1 |
| uniprot | P92973 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0045892 | IMP | UniProt | negative regulation of transcription, DNA-dependent | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| GO:0009651 | IEP, RCA, | UniProt | response to salt stress | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
| GO:0009723 | IEP, RCA, | UniProt | response to ethylene | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
| GO:0009733 | IEP, RCA, | UniProt | response to auxin | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
| GO:0009737 | IEP, RCA, | UniProt | response to abscisic acid | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
| GO:0009739 | IEP, RCA, | UniProt | response to gibberellin stimulus | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
| GO:0009751 | IEP, RCA, | UniProt | response to salicylic acid | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
| GO:0009753 | IEP, RCA, | UniProt | response to jasmonic acid | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
| GO:0046686 | IEP | UniProt | response to cadmium ion | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| GO:0010243 | IEP | UniProt | response to organonitrogen compound | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| GO:0048574 | IGI, RCA, | UniProt | long-day photoperiodism, flowering | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
| GO:0007623 | IMP, IEP, IGI, RCATAS, | UniProt | circadian rhythm | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 |
| GO:0043496 | IMP | UniProt | regulation of protein homodimerization activity | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| GO:0009409 | IGI | UniProt | response to cold | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| GO:0042754 | IMP | UniProt | negative regulation of circadian rhythm | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| GO:0006355 | RCA | Gene Ontology | regulation of transcription, DNA-dependent | 1 |
| GO:0009639 | RCA | Gene Ontology | response to red or far red light | 1 |
| GO:0010264 | RCA | Gene Ontology | myo-inositol hexakisphosphate biosynthetic process | 1 |
| GO:0042752 | RCA | Gene Ontology | regulation of circadian rhythm | 1 |
| GO:0045893 | IMP | UniProt | positive regulation of transcription, DNA-dependent | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| GO:0006351 | IEA | UniProt | transcription, DNA-templated | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
| GO:0003700 | ISS | UniProt | sequence-specific DNA binding transcription factor activity | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| GO:0003677 | IDA, IEA | Gene Ontology | DNA binding | 1 |
| GO:0019904 | ISS | Gene Ontology | protein domain specific binding | 1 |
| GO:0043565 | IDA | UniProt | sequence-specific DNA binding | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| GO:0003682 | IEA | UniProt | chromatin binding | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005634 | IDA, ISM, | UniProt | nucleus | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| Mapman id | Description |
|---|---|
| 27.3.26 | RNA.regulation of transcription.MYB-related transcription factor family |
No SignalP domains detected for this gene.
| Database | Type |
|---|---|
| PlnTFDB | MYB-related |
| PlantTFDB | MYB_related |