PLAZA 3.0 Monocots gene overview : AT2G46790

Gene: AT2G46790 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G46790
Transcript Identifier: AT2G46790.1
Gene Type: Coding gene
Location: 2 : 19232874-19234901 : positive

Family

Gene family: HOM03M000944
(75 genes in 15 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description: pseudo-response regulator 9

Curated Summary: Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.

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Identifiers

Identifier	Name
alias	PRR9
alias	TL1
alias	pseudo-response regulator 9
alias	Arabidopsis pseudo-response regulator 9
alias	TOC1-LIKE PROTEIN 1
alias	APRR9
uniprot	Q8L500

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007623	IMP, TAS,	UniProt	circadian rhythm	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
GO:0006355	TAS, IEA	Gene Ontology	regulation of transcription, DNA-dependent	1
GO:0009266	IGI	UniProt	response to temperature stimulus	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0010017	IMP	UniProt	red or far-red light signaling pathway	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0045892	IDA	UniProt	negative regulation of transcription, DNA-dependent	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0035556	IEA	UniProt	intracellular signal transduction	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0000160	IEA	InterPro	phosphorelay signal transduction system
GO:2001141	IEA	PLAZA Homology	regulation of RNA biosynthetic process	HOM03M000944

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000156	IEA, ISS	UniProt	phosphorelay response regulator activity	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0005515	IPI, IEA	Gene Ontology	protein binding	1
GO:0003677	IPI	UniProt	DNA binding	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM	UniProt	nucleus	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001789	Signal transduction response regulator, receiver domain
IPR010402	CCT domain
IPR011006	CheY-like superfamily

Mapman id	Description
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	Pseudo ARR-B