PLAZA 3.0 Monocots gene overview : AT2G44680

Gene: AT2G44680 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G44680
Transcript Identifier: AT2G44680.1
Gene Type: Coding gene
Location: 2 : 18426898-18428166 : negative

Family

Gene family: HOM03M001570
(49 genes in 15 species)
specific family
Subfamily: ORTHO03M018742
(2 genes in 1 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: casein kinase II beta subunit 4

Curated Summary: Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.

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Identifiers

Identifier	Name
alias	CKB4
alias	casein kinase II beta subunit 4
uniprot	O80507

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0042753	IMP	UniProt	positive regulation of circadian rhythm	1 2 3
GO:0007623	IMP	UniProt	circadian rhythm	1 2 3
GO:0048573	IMP	UniProt	photoperiodism, flowering	1 2 3
GO:0045859	IEA	UniProt	regulation of protein kinase activity	1 2

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004674	IMP	UniProt	protein serine/threonine kinase activity	1 2 3
GO:0019887	IEA	UniProt	protein kinase regulator activity	1 2
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT3G60250
GO:0008134	ISO	PLAZA Integrative Orthology	transcription factor binding	AT3G60250

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005956	IEA, ISS	UniProt	protein kinase CK2 complex	1 2 3
GO:0005634	IDA	UniProt	nucleus	1 2 3
GO:0005737	IDA	UniProt	cytoplasm	1 2 3

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000704	Casein kinase II, regulatory subunit
IPR016150	Casein kinase II, regulatory subunit, beta-sheet
IPR016149	Casein kinase II, regulatory subunit, alpha-helical

Mapman id	Description
29.4	protein.postranslational modification

No SignalP domains detected for this gene.