PLAZA 3.0 Monocots gene overview : AT2G41850

Gene: AT2G41850 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G41850
Transcript Identifier: AT2G41850.1
Gene Type: Coding gene
Location: 2 : 17461918-17464059 : negative

Family

Gene family: HOM03M000089
(508 genes in 14 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: polygalacturonase abscission zone A. thaliana

Curated Summary: ADPG2.

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Identifiers

Identifier	Name
alias	ADPG2
alias	polygalacturonase abscission zone A. thaliana
alias	PGAZAT
alias	ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2
uniprot	Q8RY29

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	IEA, ISS	UniProt	carbohydrate metabolic process	1 2 3 4 5 6 7
GO:0009830	TAS, RCA	UniProt	cell wall modification involved in abscission	1 2 3 4 5 6 7 8
GO:0009901	IMP	UniProt	anther dehiscence	1 2 3 4 5 6 7
GO:0010047	IMP	UniProt	fruit dehiscence	1 2 3 4 5 6 7
GO:0010227	IMP	UniProt	floral organ abscission	1 2 3 4 5 6 7
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03M000089

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004650	IDA, ISSIEA,	UniProt	polygalacturonase activity	1 2 3 4 5 6 7 8
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03M000089
GO:0016798	IEA	PLAZA Homology	hydrolase activity, acting on glycosyl bonds	HOM03M000089
GO:0004553	IEA	PLAZA Homology	hydrolase activity, hydrolyzing O-glycosyl compounds	HOM03M000089

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005576	IEA, ISM	UniProt	extracellular region	1 2 3 4 5 6 7
GO:0005618	IEA	UniProt	cell wall	1 2 3 4 5 6

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011050	Pectin lyase fold/virulence factor
IPR006626	Parallel beta-helix repeat
IPR012334	Pectin lyase fold
IPR000743	Glycoside hydrolase, family 28

Mapman id	Description
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network