Gene: AT2G41500 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G41500
Transcript Identifier
AT2G41500.1
Gene Type
Coding gene
Location
2 : 17304319-17306855 : negative

Family

Gene family
HOM03M000732
(95 genes in 15 species)
specific family

Loading...please wait

Descriptions

Description
WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
Curated Summary
Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.
Show more...

Identifiers

Identifier Name
aliasLACHESIS
aliasLIS
aliasEMB2776
uniprotO22212

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000398ISS, RCA, UniProtmRNA splicing, via spliceosome1 2 3 4
GO:0001709IMPUniProtcell fate determination1 2 3
GO:0009560IMP, RCA, UniProtembryo sac egg cell differentiation1 2 3 4
GO:0007267IMPUniProtcell-cell signaling1 2 3
GO:0009553IMPGene Ontologyembryo sac development1
GO:0000278RCAGene Ontologymitotic cell cycle1
GO:0000741RCAGene Ontologykaryogamy1
GO:0006312RCAGene Ontologymitotic recombination1
GO:0006396RCAGene OntologyRNA processing1
GO:0009640RCAGene Ontologyphotomorphogenesis1
GO:0009793RCAGene Ontologyembryo development ending in seed dormancy1
GO:0009845RCAGene Ontologyseed germination1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0009933RCAGene Ontologymeristem structural organization1
GO:0010162RCAGene Ontologyseed dormancy process1
GO:0010182RCAGene Ontologysugar mediated signaling pathway1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0010388RCAGene Ontologycullin deneddylation1
GO:0016567RCAGene Ontologyprotein ubiquitination1
GO:0016571RCAGene Ontologyhistone methylation1
GO:0016579RCAGene Ontologyprotein deubiquitination1
GO:0019915RCAGene Ontologylipid storage1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0050826RCAGene Ontologyresponse to freezing1
GO:0008380IEAInterProRNA splicing

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166ISSGene Ontologynucleotide binding1
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0005681ISSUniProtspliceosomal complex1 2 3
GO:0080008ISSGene OntologyCul4-RING ubiquitin ligase complex1
GO:0016607IDAUniProtnuclear speck1 2 3

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001680WD40 repeat
IPR020472G-protein beta WD-40 repeat
IPR003648Splicing factor motif
IPR019775WD40 repeat, conserved site
IPR027106U4/U6 small nuclear ribonucleoprotein Prp4
IPR015943WD40/YVTN repeat-like-containing domain
IPR014906Pre-mRNA processing factor 4 (PRP4)-like
IPR017986WD40-repeat-containing domain

Mapman id Description
27.1RNA.processing
No SignalP domains detected for this gene.