PLAZA 3.0 Monocots gene overview : AT2G39940

Gene: AT2G39940 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G39940
Transcript Identifier: AT2G39940.1
Gene Type: Coding gene
Location: 2 : 16672848-16675486 : negative

Family

Gene family: HOM03M000440
(144 genes in 14 species)
specific family

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Descriptions

Description: RNI-like superfamily protein

Curated Summary: Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation.

Identifiers

Identifier	Name
alias	COI1
alias	CORONATINE INSENSITIVE 1
uniprot	O04197

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006511	RCA, TAS	Gene Ontology	ubiquitin-dependent protein catabolic process	1 2
GO:0009861	TAS	UniProt	jasmonic acid and ethylene-dependent systemic resistance	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0009867	IGI, TAS,	UniProt	jasmonic acid mediated signaling pathway	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
GO:0009625	IMP	UniProt	response to insect	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0009611	IMP	Gene Ontology	response to wounding	1
GO:0009753	IMP	Gene Ontology	response to jasmonic acid	1
GO:0031348	IMP	UniProt	negative regulation of defense response	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0010118	IMP	UniProt	stomatal movement	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0042742	IMP	UniProt	defense response to bacterium	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0050832	IMP	UniProt	defense response to fungus	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0031146	IMP	UniProt	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0009641	IMP	UniProt	shade avoidance	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0009909	IMP	UniProt	regulation of flower development	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0010218	IMP	UniProt	response to far red light	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0002237	RCA	Gene Ontology	response to molecule of bacterial origin	1
GO:0007165	RCA	Gene Ontology	signal transduction	1
GO:0010103	RCA	Gene Ontology	stomatal complex morphogenesis	1
GO:0042752	RCA	Gene Ontology	regulation of circadian rhythm	1
GO:0048443	RCA	Gene Ontology	stamen development	1
GO:0006952	TAS	Gene Ontology	defense response	1
GO:0016567	IEA	UniProt	protein ubiquitination	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0004842	ISS	Gene Ontology	ubiquitin-protein ligase activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0019005	IPI	UniProt	SCF ubiquitin ligase complex	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

Mapman id	Description
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX

No SignalP domains detected for this gene.