Gene: AT2G39140 (Arabidopsis thaliana)

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Gene Identifier
AT2G39140
Transcript Identifier
AT2G39140.1
Gene Type
Coding gene
Location
2 : 16330238-16333153 : positive

Family

Gene family
HOM03M004080
(23 genes in 16 species)
specific family

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Descriptions

Description
pseudouridine synthase family protein
Curated Summary
Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins.
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Identifiers

Identifier Name
aliasSVR1
aliasPDE328
aliasSUPPRESSOR OF VARIEGATION 1
aliasPIGMENT DEFECTIVE 328

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000488IMPGene Ontologymaturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)1
GO:0000489IMPGene Ontologymaturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)1
GO:0032544IMPGene Ontologyplastid translation1
GO:0009451IEAInterProRNA modification
GO:0001522IEAInterPropseudouridine synthesis

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723ISS, IEAGene OntologyRNA binding1
GO:0009982TAS, IEAGene Ontologypseudouridine synthase activity1
GO:0016866IEAInterProintramolecular transferase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507IDA, ISMGene Ontologychloroplast1 2
GO:0009501TASGene Ontologyamyloplast1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR018496Pseudouridine synthase, RsuA/RluB/E/F, conserved site
IPR020103Pseudouridine synthase, catalytic domain
IPR006145Pseudouridine synthase, RsuA/RluB/C/D/E/F
IPR002942RNA-binding S4 domain

Mapman id Description
29.1.30protein.aa activation.pseudouridylate synthase
No SignalP domains detected for this gene.