Gene: AT2G33160 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G33160
Transcript Identifier
AT2G33160.1
Gene Type
Coding gene
Location
2 : 14053404-14056246 : positive

Family

Gene family
HOM03M000089
(508 genes in 14 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
Curated Summary
Gene structure annotation for AT2G33160.1 is inaccurate in TAIR10, see PMID:23709666 and Comments field on the locus page for updated annotation.
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Identifiers

Identifier Name
aliasNIMNA (Sanskrit for sunken' or 'low')
aliasNMA

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975ISS, IEAGene Ontologycarbohydrate metabolic process1
GO:0009793IMPGene Ontologyembryo development ending in seed dormancy1
GO:0010098IMPGene Ontologysuspensor development1
GO:0080159IMPGene Ontologyzygote elongation1
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03M000089

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650ISS, IEAGene Ontologypolygalacturonase activity1
GO:0003676IEAInterPronucleic acid binding
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000089
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03M000089
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03M000089

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576ISMGene Ontologyextracellular region1
GO:0005618IDAGene Ontologycell wall1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006626Parallel beta-helix repeat
IPR012337Ribonuclease H-like domain
IPR011050Pectin lyase fold/virulence factor
IPR000743Glycoside hydrolase, family 28
IPR012334Pectin lyase fold

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network